Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical pr... 35 0.031
U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exosto... 35 0.031
AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfa... 35 0.031
Z92803-8|CAB07245.1| 814|Caenorhabditis elegans Hypothetical pr... 33 0.094
U94835-1|AAC47510.1| 814|Caenorhabditis elegans multiple exosto... 33 0.094
AB077851-1|BAB83878.1| 814|Caenorhabditis elegans heparan sulfa... 33 0.094
Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical pr... 33 0.12
AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. 33 0.12
Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.2
U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific ... 30 1.2
U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide tr... 29 2.7
AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity ... 29 2.7
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 28 4.7
Z99278-2|CAB16491.1| 277|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z37140-2|CAA85502.1| 452|Caenorhabditis elegans Hypothetical pr... 27 6.2
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 27 6.2
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 27 8.1
U39994-2|AAB37017.1| 378|Caenorhabditis elegans Hypothetical pr... 27 8.1
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 8.1
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 27 8.1
>Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical
protein F12F6.3 protein.
Length = 382
Score = 35.1 bits (77), Expect = 0.031
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +1
Query: 346 VLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
+L +STF L+ P R L R E LRSG +PVV+ I LP+ E +DW
Sbjct: 265 LLANSTFCLV--PRGRR-----LGSFRFLETLRSGCVPVVISDSWI-LPFSETIDW 312
>U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exostoses
homolog 1 protein.
Length = 378
Score = 35.1 bits (77), Expect = 0.031
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +1
Query: 346 VLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
+L +STF L+ P R L R E LRSG +PVV+ I LP+ E +DW
Sbjct: 261 LLANSTFCLV--PRGRR-----LGSFRFLETLRSGCVPVVISDSWI-LPFSETIDW 308
>AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfate
polymerase protein.
Length = 382
Score = 35.1 bits (77), Expect = 0.031
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +1
Query: 346 VLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
+L +STF L+ P R L R E LRSG +PVV+ I LP+ E +DW
Sbjct: 265 LLANSTFCLV--PRGRR-----LGSFRFLETLRSGCVPVVISDSWI-LPFSETIDW 312
>Z92803-8|CAB07245.1| 814|Caenorhabditis elegans Hypothetical
protein K01G5.6 protein.
Length = 814
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +1
Query: 319 CGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYE 498
C +R RR ++ STF +L P++ + +L+ G IP++L ++ LP++
Sbjct: 323 CSLER-RRQLIGSSTFCFLL-PSEMFFQD-------FLSSLQLGCIPIILSNSQL-LPFQ 372
Query: 499 EVLDWKR 519
+++DW+R
Sbjct: 373 DLIDWRR 379
>U94835-1|AAC47510.1| 814|Caenorhabditis elegans multiple exostoses
homolog 2 protein.
Length = 814
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +1
Query: 319 CGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYE 498
C +R RR ++ STF +L P++ + +L+ G IP++L ++ LP++
Sbjct: 323 CSLER-RRQLIGSSTFCFLL-PSEMFFQD-------FLSSLQLGCIPIILSNSQL-LPFQ 372
Query: 499 EVLDWKR 519
+++DW+R
Sbjct: 373 DLIDWRR 379
>AB077851-1|BAB83878.1| 814|Caenorhabditis elegans heparan sulfate
GlcNAc transferase-I/II protein.
Length = 814
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +1
Query: 319 CGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQARLYEALRSGAIPVVLGGDRIRLPYE 498
C +R RR ++ STF +L P++ + +L+ G IP++L ++ LP++
Sbjct: 323 CSLER-RRQLIGSSTFCFLL-PSEMFFQD-------FLSSLQLGCIPIILSNSQL-LPFQ 372
Query: 499 EVLDWKR 519
+++DW+R
Sbjct: 373 DLIDWRR 379
>Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical
protein F11C3.2 protein.
Length = 598
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 55 TPPALGPPGGDVWADCAPISPARRKYLLSFQGLQPPP 165
TPP GPP G WA P P R + L + ++PPP
Sbjct: 209 TPPGFGPPDG--WAPGMP-KPGRTRKLPRYSTVRPPP 242
>AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein.
Length = 598
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 55 TPPALGPPGGDVWADCAPISPARRKYLLSFQGLQPPP 165
TPP GPP G WA P P R + L + ++PPP
Sbjct: 209 TPPGFGPPDG--WAPGMP-KPGRTRKLPRYSTVRPPP 242
>Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical
protein K07F5.11 protein.
Length = 290
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 137 SKYFLLAG--DIGAQSAQTSPPGGPSAGGVITSKPG 36
S YF +AG + GAQSA GGP+ GG SK G
Sbjct: 3 SAYFGVAGGSNTGAQSAYFGVGGGPAGGGGGASKVG 38
>U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific
family, class qprotein 2 protein.
Length = 405
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 137 SKYFLLAG--DIGAQSAQTSPPGGPSAGGVITSKPG 36
S YF +AG + GAQSA GGP+ GG SK G
Sbjct: 3 SAYFGVAGGSNTGAQSAYFGVGGGPAGGGGGASKVG 38
>U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide
transporter protein 2 protein.
Length = 835
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 353 RNTARLDLSVPQSAQSPIGKVTRFST--GGSHSNCRKKTSD 237
+NTA D + + +G VT F++ GG+ + CR+ TSD
Sbjct: 534 QNTANTDKPTDGTGEFSMGIVTVFNSSYGGNFAMCRQNTSD 574
>AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity
peptide transporter protein.
Length = 796
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 353 RNTARLDLSVPQSAQSPIGKVTRFST--GGSHSNCRKKTSD 237
+NTA D + + +G VT F++ GG+ + CR+ TSD
Sbjct: 495 QNTANTDKPTDGTGEFSMGIVTVFNSSYGGNFAMCRQNTSD 535
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 457 PVVLGGDRIRLPYEEVLDWK 516
PV +G D +RLPY E+ W+
Sbjct: 332 PVFIGNDGVRLPYYEMHMWR 351
>Z99278-2|CAB16491.1| 277|Caenorhabditis elegans Hypothetical
protein Y53C12B.2 protein.
Length = 277
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 175 DKDQDGTLISLLEKMVKTAPASDVFFL 255
D+D TL SLLE+ + TAP D F L
Sbjct: 24 DEDVPSTLPSLLEQNLDTAPKGDEFKL 50
>Z37140-2|CAA85502.1| 452|Caenorhabditis elegans Hypothetical
protein ZK899.2 protein.
Length = 452
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 241 DVFFLQFEC---DPPVEKRVTLPIGDWALCGTDRSRRA 345
D ++ F C PP + +P+ +A+CGTD RA
Sbjct: 364 DEKYIDFHCVPGGPPQQPEPGVPLEWYAVCGTDYENRA 401
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 137 SKYFLLAG--DIGAQSAQTSPPGGPSAGG 57
S YF +AG + GAQSA GGP+ GG
Sbjct: 3 SAYFGVAGGGNAGAQSAYFGVGGGPAGGG 31
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 377 SMSTKVESRNTARLDLSVPQSAQSPIGKVTRFSTGGSHSNCRKKTSD--AGAVFTIFSSN 204
S T +++ ++ L ++P+ +GGS S+C KK D A V T+ + N
Sbjct: 216 STLTSLDNNTSSPLGSPKSDGVRTPLFGHHNSGSGGSTSSCGKKKKDKQATRVRTVLNEN 275
Query: 203 DINV 192
+ +
Sbjct: 276 QLKI 279
>U39994-2|AAB37017.1| 378|Caenorhabditis elegans Hypothetical
protein C48C5.1 protein.
Length = 378
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 227 QHQRLMFFFCSSNVILQWRN 286
Q QRL+FF+ + VIL W N
Sbjct: 300 QLQRLLFFYFDNEVILTWVN 319
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 494 YGRRILSPPRTTGIAPDLSASYNLACS 414
+ RR PR IAPDL+ SY+ C+
Sbjct: 22 FRRRNYDGPRAYQIAPDLTCSYDNQCA 48
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 494 YGRRILSPPRTTGIAPDLSASYNLACS 414
+ RR PR IAPDL+ SY+ C+
Sbjct: 22 FRRRNYDGPRAYQIAPDLTCSYDNQCA 48
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 377 SMSTKVESRNTARLDLSVPQSAQSPIGKVTRFSTGGSHSNCRKKTSD--AGAVFTIFSSN 204
S T +++ ++ L ++P+ +GGS S+C KK D A V T+ + N
Sbjct: 216 STLTSLDNNTSSPLGSPKSDGVRTPLFGHHNSGSGGSTSSCGKKKKDKQATRVRTVLNEN 275
Query: 203 DINV 192
+ +
Sbjct: 276 QLKI 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,842
Number of Sequences: 27780
Number of extensions: 291364
Number of successful extensions: 723
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -