Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   5.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 80 PGGPSAGGVITSKPG 36
          PG  SAGGV+T   G
Sbjct: 22 PGSSSAGGVVTGASG 36


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +1

Query: 448 GAIPVVLGGDRIR----LPYEEVLDWKR 519
           GAI +++    I     L  +EVLDWK+
Sbjct: 83  GAIDILINNATINIDVTLQNDEVLDWKK 110


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 304 GDWALCGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQ 420
           GD++L    RS R V  D   +  +  +DR+  T  + +
Sbjct: 53  GDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTREIAE 91


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 279 GETRNFADRRLGALWNG 329
           G  R+F+ R LG +W G
Sbjct: 629 GTPRSFSARVLGMVWAG 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,986
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)