Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16890.1 68418.m01980 exostosin family protein contains Pfam ... 37 0.007
At3g42180.2 68416.m04334 exostosin family protein contains Pfam ... 35 0.038
At3g42180.1 68416.m04335 exostosin family protein contains Pfam ... 35 0.038
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 34 0.050
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 34 0.050
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 34 0.050
At5g44930.2 68418.m05510 exostosin family protein contains Pfam ... 33 0.088
At5g44930.1 68418.m05509 exostosin family protein contains Pfam ... 33 0.088
At5g11130.1 68418.m01300 exostosin family protein contains Pfam ... 33 0.088
At3g45400.1 68416.m04901 exostosin family protein contains Pfam ... 33 0.088
At1g74680.1 68414.m08648 exostosin family protein contains Pfam ... 33 0.15
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ... 32 0.27
At1g67410.1 68414.m07672 exostosin family protein contains Pfam ... 32 0.27
At5g20260.1 68418.m02412 exostosin family protein contains Pfam ... 31 0.36
At3g07620.1 68416.m00912 exostosin family protein contains Pfam ... 31 0.47
At4g16745.1 68417.m02529 exostosin family protein contains Pfam ... 31 0.62
At2g35100.1 68415.m04306 exostosin family protein contains Pfam ... 31 0.62
At5g33290.1 68418.m03948 exostosin family protein contains Pfam ... 30 0.82
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 30 0.82
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 29 1.4
At4g11770.1 68417.m01876 kelch repeat-containing F-box family pr... 29 1.9
At5g39210.1 68418.m04749 expressed protein 27 5.8
At1g21810.1 68414.m02729 expressed protein 27 5.8
At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal... 27 7.7
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 27 7.7
At3g52050.2 68416.m05709 5'-3' exonuclease family protein simila... 27 7.7
At3g52050.1 68416.m05710 5'-3' exonuclease family protein simila... 27 7.7
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 27 7.7
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 27 7.7
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 7.7
>At5g16890.1 68418.m01980 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 511
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +1
Query: 421 ARLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
ARL++A+ SG IPV++ D + P+E +LD+K+
Sbjct: 374 ARLFDAIVSGCIPVIV-SDELEFPFEGILDYKK 405
>At3g42180.2 68416.m04334 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 341
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
R EA+ SG +PVV+ D LP+ +VLDW +
Sbjct: 242 REVEAIYSGCVPVVIS-DNYSLPFNDVLDWSK 272
>At3g42180.1 68416.m04335 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 425
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
R EA+ SG +PVV+ D LP+ +VLDW +
Sbjct: 326 REVEAIYSGCVPVVIS-DNYSLPFNDVLDWSK 356
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 34.3 bits (75), Expect = 0.050
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
RL++A+ S IPV++ D I LPYE+VL++
Sbjct: 384 RLFDAIASHCIPVIISDD-IELPYEDVLNY 412
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 34.3 bits (75), Expect = 0.050
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -1
Query: 518 RFQSNTSS--YGRRILSP-PRTTGIAPDLSASYNLACSRAVVT*FRSAGASMST 366
RFQSN SS +G R +SP P + DLS SY++ + A T AGA ST
Sbjct: 330 RFQSNQSSVEHGSRTISPSPLPMATSADLSGSYHVPDNSASNTFATQAGARNST 383
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 34.3 bits (75), Expect = 0.050
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -1
Query: 518 RFQSNTSS--YGRRILSP-PRTTGIAPDLSASYNLACSRAVVT*FRSAGASMST 366
RFQSN SS +G R +SP P + DLS SY++ + A T AGA ST
Sbjct: 330 RFQSNQSSVEHGSRTISPSPLPMATSADLSGSYHVPDNSASNTFATQAGARNST 383
>At5g44930.2 68418.m05510 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 443
Score = 33.5 bits (73), Expect = 0.088
Identities = 13/32 (40%), Positives = 25/32 (78%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
RL++A+ S +PV++ D I LP+E+V+D+++
Sbjct: 314 RLFDAIASLCVPVIVS-DGIELPFEDVIDYRK 344
>At5g44930.1 68418.m05509 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 443
Score = 33.5 bits (73), Expect = 0.088
Identities = 13/32 (40%), Positives = 25/32 (78%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
RL++A+ S +PV++ D I LP+E+V+D+++
Sbjct: 314 RLFDAIASLCVPVIVS-DGIELPFEDVIDYRK 344
>At5g11130.1 68418.m01300 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 336
Score = 33.5 bits (73), Expect = 0.088
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWK 516
R+ E+L SG +PV++ D LP+ +VL+WK
Sbjct: 235 RIVESLYSGCVPVIIA-DYYVLPFSDVLNWK 264
>At3g45400.1 68416.m04901 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 475
Score = 33.5 bits (73), Expect = 0.088
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
RL++A+ S +PV++ D I LP+E+V+D+
Sbjct: 345 RLFDAIASHCVPVIISDD-IELPFEDVIDY 373
>At1g74680.1 68414.m08648 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 461
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
RL++A+ S +PV++ D+I LP+E+ LD+
Sbjct: 341 RLFDAIVSHCVPVIIS-DQIELPFEDTLDY 369
>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 425
Score = 31.9 bits (69), Expect = 0.27
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 421 ARLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
AR+ +++ G IPV+L D LP+ ++L+W++
Sbjct: 327 ARITDSIHYGCIPVILS-DYYDLPFNDILNWRK 358
>At1g67410.1 68414.m07672 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 430
Score = 31.9 bits (69), Expect = 0.27
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
RL++A+ S IPV++ D+I LP+E+ +D+
Sbjct: 315 RLFDAIVSHCIPVIIS-DKIELPFEDEIDY 343
>At5g20260.1 68418.m02412 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 334
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
R+ A+ G +PV++ D LP+ +VLDW +
Sbjct: 236 RVVAAINLGCVPVIIS-DHYALPFSDVLDWTK 266
>At3g07620.1 68416.m00912 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 470
Score = 31.1 bits (67), Expect = 0.47
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
R+ EA+ SG +PV++ + + LP+ +VL+W++
Sbjct: 372 RVPEAIYSGCVPVLISENYV-LPFSDVLNWEK 402
>At4g16745.1 68417.m02529 exostosin family protein contains Pfam
PF03016: Exostosin family
Length = 542
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
R+ EA+ +PVV+ D LP+ +VLDW
Sbjct: 435 RIVEAIYYECVPVVIA-DNFMLPFSDVLDW 463
>At2g35100.1 68415.m04306 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 447
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/32 (34%), Positives = 25/32 (78%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWKR 519
RL++++ S +P+++ D I LP+E+V+D+++
Sbjct: 318 RLFDSIVSLCVPLIVS-DSIELPFEDVIDYRK 348
>At5g33290.1 68418.m03948 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 500
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
R EA+ +G +PV++ D LP+ +VL+W
Sbjct: 401 REVEAIYAGCVPVIIS-DNYSLPFSDVLNW 429
>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
(PPR) repeat-containing protein contains Pfam profiles:
PF03016 exostosin family, PF01535 PPR repeat
Length = 1388
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDWK 516
R+ EAL SG +PV++ + P+ +VL+W+
Sbjct: 1288 RIVEALYSGCVPVLINSGYVP-PFSDVLNWR 1317
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 424 RLYEALRSGAIPVVLGGDRIRLPYEEVLDW 513
RL E+ G +PVV+ D I+LP+ E + W
Sbjct: 357 RLVESAVLGCVPVVIA-DGIQLPFSETVQW 385
>At4g11770.1 68417.m01876 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 396
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -1
Query: 473 PPRTTGIAPDLSASYNLACSRAVVT*FRSAGASMSTKVESRNTARLDLSVPQSAQSPIGK 294
P RT P+L + + +C R ++T A ++K E + + L +S+P S P+
Sbjct: 87 PTRTPSPEPNLKSRWFTSCFRPILTNLTRA----TSKEEKKLSENLMVSIPTSNDCPLSG 142
Query: 293 VTRFSTGGSH 264
+T +T GS+
Sbjct: 143 LT-CNTIGSY 151
>At5g39210.1 68418.m04749 expressed protein
Length = 156
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 310 WALCGTDRSRRAVLRDSTFVLILAPADRNYVTTALLQARL 429
+++C T R RR T+VL+ A D +VT L+A+L
Sbjct: 65 FSVCAT-RRRRVHSNSDTYVLLEAGQDEQFVTEDELKAKL 103
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 184 QDGTLISLLEKMVKTAPASDVFFLQFECDPPVEKRVTLPI 303
+DG +SL+EK+ K D + +C EKR++L I
Sbjct: 265 KDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEI 304
>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta
catalytic subunit, putative (POLD1) similar to DNA
polymerase delta [Glycine max] GI:2895198, OsPol delta
large subunit [Oryza sativa (japonica cultivar-group)
GI:9188570; contains Pfam profiles: PF03175 DNA
polymerase type B, organellar and viral, PF00136 DNA
polymerase family B, PF03104 DNA polymerase family B,
exonuclease domain
Length = 1081
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 256 QFECDPPVEKRVTLPIGDWALCGTDRSRRAVLRDSTF 366
+F+ +E+ TL I ++ L G ++ R +RDSTF
Sbjct: 394 KFDLPYLIERAATLGIEEFPLLGRVKNSRVRVRDSTF 430
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -2
Query: 265 IRTAEKKHQTLVLFSPFFLAMISTFHLDPCLIL*AVVVNPEN*ASTFFLREI*AHNLPKH 86
+ TA + HQ L S F ++ L A N E+ + F + A P H
Sbjct: 1 METATRTHQQRKLISSFLDITVNQTVEIATQFLEATTWNLEDAINLFLI----ARRNPHH 56
Query: 85 HHPEGLVPV 59
HH E LVP+
Sbjct: 57 HHGEELVPL 65
>At3g52050.2 68416.m05709 5'-3' exonuclease family protein similar
to DNA polymerase type I [Rhodothermus sp. 'ITI 518']
gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739:
5'-3' exonuclease, N-terminal resolvase-like domain
Length = 365
Score = 27.1 bits (57), Expect = 7.7
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -1
Query: 455 IAPDLSASYNLACSRAVVT*FRSAGASMSTKVESRNTARLDLSVPQSAQSPIGKVTRFST 276
I+P L+ S CS V+ F + AS ST T+ + PQS + P R ++
Sbjct: 56 ISPSLARSAKYYCSSVAVSEFSNEAASGSTL-----TSISEDVTPQSIKYPFKSEERVAS 110
Query: 275 GGSHSNCRKKTSDAGAV 225
+ SN R D ++
Sbjct: 111 TAASSNGRVMLIDGTSI 127
>At3g52050.1 68416.m05710 5'-3' exonuclease family protein similar
to DNA polymerase type I [Rhodothermus sp. 'ITI 518']
gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739:
5'-3' exonuclease, N-terminal resolvase-like domain
Length = 425
Score = 27.1 bits (57), Expect = 7.7
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -1
Query: 455 IAPDLSASYNLACSRAVVT*FRSAGASMSTKVESRNTARLDLSVPQSAQSPIGKVTRFST 276
I+P L+ S CS V+ F + AS ST T+ + PQS + P R ++
Sbjct: 33 ISPSLARSAKYYCSSVAVSEFSNEAASGSTL-----TSISEDVTPQSIKYPFKSEERVAS 87
Query: 275 GGSHSNCRKKTSDAGAV 225
+ SN R D ++
Sbjct: 88 TAASSNGRVMLIDGTSI 104
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 269 SHSNCRKKTSDAGAVFTIFSSNDINVPS*SLS 174
SH RK TSD G+ T SSN N+ S S+S
Sbjct: 202 SHEKLRKVTSDQGSATT--SSNQENIGSSSVS 231
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 269 SHSNCRKKTSDAGAVFTIFSSNDINVPS*SLS 174
SH RK TSD G+ T SSN N+ S S+S
Sbjct: 319 SHEKLRKVTSDQGSATT--SSNQENIGSSSVS 348
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 380 RLLIGITLQQLYYRLDCMKRSDLVLYLSS*AVTEFVCHTKRY 505
R +IG T + +RL ++++DLV L +V+E H + +
Sbjct: 551 RFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELF 592
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,218
Number of Sequences: 28952
Number of extensions: 270517
Number of successful extensions: 744
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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