Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 106 1e-23
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 3e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 5.4
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054) 27 9.4
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 106 bits (255), Expect = 1e-23
Identities = 63/155 (40%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +1
Query: 1 SSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIG 180
SS+D+ +HDTYYVVAHFHYVLS + TG N KI F+ +FIG
Sbjct: 65 SSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIG 124
Query: 181 VNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ- 357
VNITFFPQHFLGLAG PRRYSD+ D +
Sbjct: 125 VNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREV 184
Query: 358 RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 453
+ + N S S+E Q PPA H+YNELP +
Sbjct: 185 KFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 71.7 bits (168), Expect = 3e-13
Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 121 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXX 300
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78
Query: 301 XXXXXXXXXXXXXXXXXNQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 453
+ + + N S S+E Q PPA H+YNELP +
Sbjct: 79 SVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 205 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 381
HFLGLAG PRRYSD+ D + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 382 LPS---SIE*YQNLPPAEHSYNELPIL 453
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 205 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 381
HFLGLAG PRRYSD+ D + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 382 LPS---SIE*YQNLPPAEHSYNELPIL 453
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 205 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 381
HFLGLAG PRRYSD+ D + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 382 LPS---SIE*YQNLPPAEHSYNELPIL 453
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 205 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 381
HFLGLAG PRRYSD+ D + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 382 LPS---SIE*YQNLPPAEHSYNELPIL 453
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 205 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQ-RINLFSLN 381
HFLGLAG PRRYSD+ D + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 382 LPS---SIE*YQNLPPAEHSYNELPIL 453
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 205 HFLGLAGIPRRYSDYPD 255
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 108 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 230
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 380 ISHHQLNDIKIYHQQNIHIMNYQF 451
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 184 NITFFPQHFLGLAGIPRRY 240
+I F +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192
>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 239 YRRGIPAKPKKCCGKNVIFTP 177
Y R I A+ K+C GKNV+ P
Sbjct: 120 YFRAIIARCKECLGKNVVLIP 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,923
Number of Sequences: 59808
Number of extensions: 172729
Number of successful extensions: 263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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