Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A221 Cluster: Sec7 domain protein; n=1; Entamo...    36   0.47 
UniRef50_Q8D187 Cluster: Putative uncharacterized protein; n=14;...    34   1.4  
UniRef50_Q9VVS4 Cluster: Mediator of RNA polymerase II transcrip...    33   4.4  

>UniRef50_UPI000049A221 Cluster: Sec7 domain protein; n=1; Entamoeba
            histolytica HM-1:IMSS|Rep: Sec7 domain protein -
            Entamoeba histolytica HM-1:IMSS
          Length = 1660

 Score = 35.9 bits (79), Expect = 0.47
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 223  NNDSIATGNRAAQNSTERNFITSDVIWGHDKRLELNS*LQLLCYCC--PVTSFCSIVCRK 396
            NND I     A Q+ T +     D I   +K L+ N   +++C CC  PV  F  + C  
Sbjct: 1397 NNDIINYFFDAVQSFTLQQGSVIDEIEKKEKELDNNQTEEIICSCCKKPVQQFELVECPF 1456

Query: 397  CNIKF 411
            C++KF
Sbjct: 1457 CSLKF 1461


>UniRef50_Q8D187 Cluster: Putative uncharacterized protein; n=14;
           Yersinia|Rep: Putative uncharacterized protein -
           Yersinia pestis
          Length = 270

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 151 TGFAVSESYSLWHSLVHLRYNVNRNNDSIATGNRAAQNSTERNFITSDVIWGHDK 315
           T F  + +YSLW +  +   N  R+++    G R   N T+R++I     W  D+
Sbjct: 88  TWFQPNTAYSLWGAARNTSANNQRSSERYQLGGRTRYNLTDRHYIFGQASWLTDR 142


>UniRef50_Q9VVS4 Cluster: Mediator of RNA polymerase II
           transcription subunit 11; n=4; Endopterygota|Rep:
           Mediator of RNA polymerase II transcription subunit 11 -
           Drosophila melanogaster (Fruit fly)
          Length = 176

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 115 YILQISIVQ-HNGTGFAVSESYSL-WHSLVHLRYNVNRNNDSIATGNRAAQNSTER 276
           Y+ Q+S  Q H G+G+A ++   + WH + H R  V    ++ A  + AA+   +R
Sbjct: 65  YLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRVRELEETKAKHSHAARQQLKR 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,648,506
Number of Sequences: 1657284
Number of extensions: 7152967
Number of successful extensions: 20169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20148
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)