Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    29   0.28 
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    28   0.84 
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.5  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   1.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   3.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   4.5  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   4.5  

>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 266 EF*AARFPVAMLSLFRLTLYRRWTNECHRLYD-SLTAKPVPLCCTML 129
           EF  A  P+ +L      ++ +   EC RLY+  +T + + LCC+ L
Sbjct: 260 EFVTANDPIQILGTSAEIVFPKDDEECQRLYNLDVTTEEILLCCSDL 306


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 187 HSLVHLRYNVNRNNDSIATGNRAAQNSTERNFITSDVIWGHDKRLEL 327
           H+ +   ++   N D     NRA  ++  +N+ T D IW +D  L L
Sbjct: 252 HNEIFSFFHEESNWDDYVAVNRAFADALIKNYKTGDTIWVNDYHLLL 298


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +1

Query: 163 VSESYSLWHSLVHLRYNVNRNNDSIATGNRAAQNSTERNFITSDVIWG 306
           + ES  L   L   R+   +NN S+   +  + N ++ +     ++WG
Sbjct: 150 LGESRDLIRRLKQKRFETKKNNFSVKESSNLSNNDSDASLDEDTLLWG 197


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 109 KYYILQISIVQHNGTGFAVSESYSLWHSLVHLRYNVNRNND 231
           ++++  +S +    +   ++E YS + SLV L Y +  +N+
Sbjct: 770 RFWVQTLSDIGKGSSAIRIAEKYSDYRSLVELCYQLYEDNE 810


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 HDKRLELNS*LQLLCYCCPVTSFCSIVCR 393
           H+K++ LN  L    YC  + S C+IV +
Sbjct: 852 HEKQILLNYMLNRTRYCLEILSACAIVTK 880


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -1

Query: 347  NNCSYEFSSSRLSWPQMTSLVMKLRSVEF*AARFPVAMLSLFRLTLYRRWTNECHRLYD 171
            + C  E++S+  +W      V      ++   RFP A+L+LF +     W +    + D
Sbjct: 1116 SQCVLEYASTPNNWEVWAPRVWS-NPPDYDFDRFPHALLALFEIASIEGWVDIMRSVMD 1173


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 152  QVLQSVSRI-VCGTRWSISDITLIGTTTASLQGTEPLKTRLNATSLQVTSFGATTNDLN* 328
            +V Q ++ + + G   S S ITL G   +S Q +   +  L      +TS GA  N  N 
Sbjct: 908  EVSQPLANVTILGLTESPSSITLNGQNVSSFQYSNDTEELLITGLQNITSSGAFANSWNL 967

Query: 329  T 331
            T
Sbjct: 968  T 968


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,542
Number of Sequences: 5004
Number of extensions: 32650
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)