Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937...    28   3.4  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    27   6.0  
07_03_0988 + 23160028-23160360                                         27   7.9  

>09_02_0434 +
           9365038-9366150,9367352-9368680,9368906-9370012,
           9370960-9371022
          Length = 1203

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQNSTERNF-ITSDVIWGHDKRLELNS 333
           R N+NR+ DS+   NR  +    ++F +  D +WG +  LE+ S
Sbjct: 208 RINLNRDGDSVTRANRIVRFLKAKSFLLLVDDLWGGE--LEMGS 249


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 323 SSRLSWPQMTSLVMKLRSVEF*A-ARFPVAMLSLFRLTLYRRWTNECHRLYDSLTAKPVP 147
           S R S     S+V KLRS+   + AR P+A++      +Y   T    +L++   A  V 
Sbjct: 735 SCRKSLDDAISMVNKLRSLSTDSQARVPLALIIDGNSLVYIFDTEREEKLFEVAIACDVV 794

Query: 146 LCC 138
           LCC
Sbjct: 795 LCC 797


>07_03_0988 + 23160028-23160360
          Length = 110

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 231 VVVPINVISEMDQRVPQTIRLTDCKTCTIMLYYA 130
           + + + V+ + D+R+  TIR+ D     + +YYA
Sbjct: 19  IFITLKVMDQEDRRIRHTIRMADKLQVVMDMYYA 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,130
Number of Sequences: 37544
Number of extensions: 184080
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)