Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)                29   2.0  
SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_49954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               28   4.6  
SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_38537| Best HMM Match : VWA (HMM E-Value=0)                         27   6.1  

>SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)
          Length = 567

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 109 KYYILQISIVQHNGTGFAVSESYSLWHSLVH 201
           +YY+  + +V H    + +S SY L H+L H
Sbjct: 165 QYYVQYLGVVCHQWFSWPISYSYDLTHTLQH 195


>SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 355 CCPVTSFCSIVCRKCNI 405
           CCP  + C + C++CNI
Sbjct: 260 CCPEDTKCKVRCKECNI 276


>SB_49954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 146 MVQVLQSVSRIVCG-TRWSISDITLIGTT 229
           ++Q+LQSV R VCG    S+SDI L  TT
Sbjct: 130 VLQLLQSVKRKVCGDVAPSVSDIALGETT 158


>SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 6   SIVHLLMKLKLSVGYSIVFNNIYISSAVYKSFNM*ILH 119
           SI++ L+ +  S+G SIV   IY +  +Y   N+ +L+
Sbjct: 248 SILNALLSVTASIGNSIVVYTIYTTPRLYSPANLLLLN 285


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 127  ISIVQHNGTGFAVSESYSLWHSLVHLRYNVNRNNDSIATGNRAAQN 264
            I  + H G G  V++S S W   +H RY    N+D     ++ + N
Sbjct: 1095 IGCICHEG-GAPVAQSVSRWWHEMHQRYTDKNNDDDDGDHDKTSDN 1139


>SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 267 RVLSGSVPCSDAVVVPINVISEMDQRVPQTIRLTDCKTCTIMLY 136
           RVL   + C    V+     SE+   +P T R +DC+T  ++LY
Sbjct: 788 RVLQAGM-CFVTSVLGKRYTSELSLDLPYTYRQSDCRTPIVLLY 830


>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1174

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 355 CCPVTSFCSIVCRKCNIKFNTMAHAI 432
           CCP+ S C ++CRK  +K    A AI
Sbjct: 68  CCPLGSQCELLCRKA-VKQERCAAAI 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,851,219
Number of Sequences: 59808
Number of extensions: 241253
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)