Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF003151-16|AAK18916.3|  253|Caenorhabditis elegans Hypothetical...    28   4.0  
AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical...    28   4.0  
Z47072-3|CAI79221.1|  126|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF067607-4|AAF98610.2|  390|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 400 CTYDILYYRNW*PDNSNITIAVMSSVQVVCRGP 302
           C  D+++ R W  DN ++T A  +S    C  P
Sbjct: 414 CDKDLMWLRKWLRDNGDVTTAASNSPPAKCWTP 446


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 395  LRHTILQKLVTGQQ*HNNCSYEFSSSRLSWPQMTSLVMKLR 273
            L H +L  LV G   + +  Y   S R+ WPQ   L+ K+R
Sbjct: 2011 LHHMVLWTLVDGDSMNQHDRY--GSIRVRWPQYAGLMKKIR 2049


>AF003151-16|AAK18916.3|  253|Caenorhabditis elegans Hypothetical
           protein D1007.10a protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 9   IVHLLMKLKLSVGYSIVFNNIYISSAVYKSFNM*ILH 119
           I  L++  +  +G  + F NIYI+S V+ +F + IL+
Sbjct: 178 ITDLIVNSQKRIGKYLNFRNIYITSTVFVTFLLNILY 214


>AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical
           protein D1007.10b protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 9   IVHLLMKLKLSVGYSIVFNNIYISSAVYKSFNM*ILH 119
           I  L++  +  +G  + F NIYI+S V+ +F + IL+
Sbjct: 324 ITDLIVNSQKRIGKYLNFRNIYITSTVFVTFLLNILY 360


>Z47072-3|CAI79221.1|  126|Caenorhabditis elegans Hypothetical
           protein F26C11.4 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 182 CGTRWSISDITLIGTTTASLQGTEPLKTRLNATSLQVTSFGATTNDLN*TH 334
           CG      +++++  T A+ Q +EP+      TS   T+ G    D N  H
Sbjct: 25  CGYPVDAINVSVMNVTAAAFQCSEPISIMCQVTSFAFTATGIAGFDGNGGH 75


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 172 SYSLWHSLVHLRYNVNRNNDSIATGNRAAQNSTERNFITSDVIWGHDKRLELNS*LQLLC 351
           S  L   + HLRY     +  + T  R   ++T +     DVI G   + +LNS L +LC
Sbjct: 275 SIQLRMKINHLRYQ----DVHVGTWVRFLASATPQKQTIEDVIDGGSSKKDLNSLLLILC 330

Query: 352 Y--CCPVTSF-CSIVC 390
           +       SF C I C
Sbjct: 331 HRNSYVFVSFSCKIFC 346


>AF067607-4|AAF98610.2|  390|Caenorhabditis elegans Hypothetical
           protein C18H7.4 protein.
          Length = 390

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQN 264
           RY + RN +S   GNR+A N
Sbjct: 65  RYEIKRNQNSAKLGNRSASN 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,350
Number of Sequences: 27780
Number of extensions: 181869
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)