Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.56 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQNSTERN 279
           R N N+ ND+   GNR  QN  +RN
Sbjct: 494 RQNGNKQNDNKQNGNR--QNDNKRN 516



 Score = 24.6 bits (51), Expect = 0.56
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQNSTERN 279
           + N NR ND+   GNR   N   +N
Sbjct: 504 KQNGNRQNDNKRNGNRQNDNQNNQN 528



 Score = 24.2 bits (50), Expect = 0.74
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQNSTERN 279
           R N NR ND+   GNR  QN  ++N
Sbjct: 459 RQNDNRQNDNKQNGNR--QNDNKQN 481



 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQNSTERN 279
           + N NR ND+   GNR  QN  ++N
Sbjct: 469 KQNGNRQNDNKQNGNR--QNDNKQN 491



 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 RYNVNRNNDSIATGNRAAQNSTERN 279
           + N NR ND+   GNR  QN  ++N
Sbjct: 479 KQNGNRQNDNKQNGNR--QNGNKQN 501


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 211 NVNRNNDSIATGNRAAQNSTERNFIT---SDVIW 303
           N+  N D ++ G     N TE+  ++   S++ W
Sbjct: 364 NIQENGDQVSVGRYFYPNGTEKMTLSVNESNITW 397



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 166 SESYSLWHSLVHLRYNVNRNNDSIATGNRAAQNSTERNFITSDVI 300
           ++S S+W +  +L   + +   S +TG  A  ++ +R F   D+I
Sbjct: 319 ADSGSIWETGKNLFEFIRKQVLSGSTGKVAFDDNGDRIFAEYDII 363


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 127  ISIVQHNGTGFAVSE 171
            + +  HN  GFAV+E
Sbjct: 1532 LRVTAHNNAGFAVAE 1546


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 288 CNEVAFSRVLSGSVPCSDAV 229
           CN+ A  +V+SG V  + +V
Sbjct: 203 CNKTAVRKVISGVVGAASSV 222


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 281 SLQVTSFGATTNDL 322
           SL++ S+G TT+DL
Sbjct: 175 SLRMASYGWTTDDL 188


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 281 SLQVTSFGATTNDL 322
           SL++ S+G TT+DL
Sbjct: 175 SLRMASYGWTTDDL 188


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 228 VVPINVISEMDQRVPQTIRLTDCKT 154
           V+PI+V +E+    P   +  DC T
Sbjct: 387 VLPISVANELRHSRPVPAKKYDCVT 411


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 228 VVPINVISEMDQRVPQTIRLTDCKT 154
           V+PI+V +E+    P   +  DC T
Sbjct: 387 VLPISVANELRHSRPVPAKKYDCVT 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,799
Number of Sequences: 438
Number of extensions: 2497
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)