Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D12f
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11070.1 68418.m01293 expressed protein                             28   3.7  
At1g54385.1 68414.m06201 expressed protein ; expression supporte...    27   5.0  
At5g56325.1 68418.m07030 hypothetical protein                          27   8.7  
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    27   8.7  
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    27   8.7  

>At5g11070.1 68418.m01293 expressed protein
          Length = 152

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 337 LQLLCYCCPVTSFCSIVCRKCNIKFNTMAHAIHHS 441
           L+L   C  V S   + CR  N  +N   H  HHS
Sbjct: 63  LELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHS 97


>At1g54385.1 68414.m06201 expressed protein ; expression supported
           by MPSS
          Length = 560

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 297 DVTCNEVAFSRVLSGSVPCSDAVVVPINVISEMDQ 193
           D++  +  FSRV  GS   SD+ +VP +     D+
Sbjct: 377 DISLKDGLFSRVTKGSTTVSDSPLVPYDTCENGDE 411


>At5g56325.1 68418.m07030 hypothetical protein
          Length = 264

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 307 HDKRLELNS*LQLLCYCCPV 366
           HD++LE+N  L LL  C P+
Sbjct: 239 HDEKLEMNKELSLLPICSPI 258


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 151 TGFAVSESYSLWHSLVHLRYNVNRNNDSIAT---GNRAAQNSTERNFITSDVIWG 306
           + F  S + +LW +   L YN N  N +  T   G+ +  N+    F  S V WG
Sbjct: 308 SSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWG 362


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 151 TGFAVSESYSLWHSLVHLRYNVNRNNDSIAT---GNRAAQNSTERNFITSDVIWG 306
           + F  S + +LW +   L YN N  N +  T   G+ +  N+    F  S V WG
Sbjct: 308 SSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWG 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,692,614
Number of Sequences: 28952
Number of extensions: 158355
Number of successful extensions: 380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)