Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   0.71 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.7  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 129 LCFITFNISLFFF*RSCSMPENSLRSMLASKYFIMFYICEI 7
           LC I F + + +      +PE  +  +   KY+ + Y C I
Sbjct: 301 LCLIPFRVFILWI---ILVPEEQVYHLEIEKYYNILYFCRI 338


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = -2

Query: 379 PEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEE 242
           PE +       +  + SEP        + S  +KP  T  PE   E
Sbjct: 393 PEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNE 438


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 70  WHRTTSSKKKQRY 108
           W +  SSKKK RY
Sbjct: 229 WKKNDSSKKKTRY 241


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 385 PTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRK 278
           P P++ +   SSAS  S S+   P   +    VVR+
Sbjct: 201 PIPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,412
Number of Sequences: 336
Number of extensions: 2383
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)