Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.42 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.56 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.3  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    27   1.7  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    27   1.7  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   3.9  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   5.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   6.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.8  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = -2

Query: 514 ANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLIS 335
           +NK +EF+          G       L   +G S   T++V  PTP  I+  ++S S+  
Sbjct: 637 SNKSSEFVGQTTTEYTTSGSVGFTTTLATQSG-SVPGTVLVDVPTPSWITETVTSGSVGF 695

Query: 334 HSEPVLPYGTKAKPSVVRKPSVTSVPE 254
            +    P GT A   +V  P+ + V E
Sbjct: 696 TTTIATPIGTTAGTVLVDIPTPSWVTE 722



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
           T++V  PTP  ++  ++S S+   +    P GT A   VV  P+ + V E
Sbjct: 817 TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTE 866



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
           T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 781 TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTE 830



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 403  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
            T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 889  TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTE 938



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 403  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
            T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 925  TVLVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTE 974



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 403  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
            T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 961  TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTE 1010



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
           T++V  PTP  ++  ++S S+   +    P G+ A   +V  P+ + V E
Sbjct: 709 TVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVLVDVPTPSWVTE 758



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 403  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
            T++V  PTP  ++  ++S S+   +    P G+ A   +V  P+ + V E
Sbjct: 853  TVVVDVPTPSWVTETVTSGSVGFTTTIATPIGSTAGTVLVDIPTPSWVTE 902


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 397 IVACPTPEQISVFISSASLISHSEPVL 317
           I++ PTP   S+ ISS+S+IS S  +L
Sbjct: 624 ILSSPTPSTSSLMISSSSIISGSSSIL 650


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
           T++V  PTP  ++  ++S S+   +    P GT A   VV  P+ + V E
Sbjct: 680 TVLVDIPTPSWVTETVTSGSVEFTTTIATPVGTTAGTVVVDIPTPSWVTE 729



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
           T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 716 TVVVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTE 765



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTS 263
           T++V  PTP  ++  ++S S+   +    P GT A   ++  P+ T+
Sbjct: 752 TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLIDVPTPTA 798



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 403 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 254
           T++V  PTP  ++  ++S S+   +    P G+ A   +V  P+ + V E
Sbjct: 644 TVVVDIPTPSWVTETVTSGSVGFTTTIATPVGSTAGTVLVDIPTPSWVTE 693


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 359 KN*YLLRSGTRDNQSILVRVASVHQKLFYLDEVADNVIPNRL-EQDKFSL 505
           KN   L SG   N +      S H K   LD+  DNV+P +L + D+F L
Sbjct: 132 KNNCSLSSGIFTNSNGTNNCFSTHPKS--LDDAKDNVVPKKLNDTDQFPL 179


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 135 YLYRRRKTTTLGSVSFITKNNMIKRHK 215
           YL R++    L ++  + K  MIKRHK
Sbjct: 170 YLVRQKSNHRLFAMKILNKREMIKRHK 196


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 316 PYGTKAKPSVV-RKPSVTSVPEKLEEKAT 233
           P+ T   P  + R+P   S+PEK  EKAT
Sbjct: 416 PHPTSTMPEALPREPLSFSLPEKAPEKAT 444


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 398 DCRVSHS*ANISFYIIC*PYQPQ*ASVAIRH*GE 297
           DC VS   + ++F++ C PY+PQ A    ++  E
Sbjct: 330 DCIVSILSSILNFFLRCYPYKPQYADRVFQYINE 363



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 74  IEQLLQKKNKDILNVMKHN*LFIS*EENDDPRVRI 178
           +  +++KK  D L+ +++  L +    NDDP+++I
Sbjct: 450 VSVIIEKKGVDSLDDLQNVALMVHYLNNDDPQIQI 484


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 60  KNFLASNNFFKKKTKIY*ML*SITNYLYRRRKTTTLGSVSFITKNNMIK 206
           K F A+ ++      +  +L  + NY   RRK   +G++ F+T+   I+
Sbjct: 451 KLFSAAKHYNSLNGLLAMILVHMANYKLARRKLVQIGALKFLTRQCFIQ 499


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  IIKYLEASMLLKEFSGIEQLLQKKNKDILNVMKH 127
           + +YLE  M L   +G+E  LQK  K  L ++++
Sbjct: 620 VSRYLENDMDLLGLTGVEDKLQKDVKITLELLRN 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,456
Number of Sequences: 5004
Number of extensions: 37797
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)