Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 36 0.026
07_03_1117 - 24096425-24097853,24097894-24098336 29 1.7
12_02_0668 + 21688853-21688933,21689043-21689081,21689597-216897... 28 4.0
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 28 4.0
07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723... 28 4.0
07_03_0732 + 21050941-21051811,21053676-21053720,21053931-210539... 28 5.2
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 27 6.9
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 27 6.9
05_04_0052 - 17515344-17517353 27 9.1
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938 27 9.1
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 35.5 bits (78), Expect = 0.026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLL 431
YL N T ILFKPI+ N+V +Q+ LL
Sbjct: 708 YLQNPSTRLILFKPIKTNIVEAHIQLHSLL 737
>07_03_1117 - 24096425-24097853,24097894-24098336
Length = 623
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 481 PIRNNVV--GYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEPVLPYG 308
P+ VV G F ++ ++ G S + C T I + S + SH P LP+
Sbjct: 557 PLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHW 616
Query: 307 TKAKPS 290
T A+ S
Sbjct: 617 TPARRS 622
>12_02_0668 +
21688853-21688933,21689043-21689081,21689597-21689794,
21690288-21690341,21690772-21690825,21691544-21691597,
21691694-21691765,21691860-21691949,21692132-21692188,
21692449-21692514
Length = 254
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 328 EPVLPYGTKAKPSVVRKPSVTSVPEKL 248
EP +P G +A PS+ RK + V EK+
Sbjct: 13 EPAVPAGEEAAPSLERKEELLPVEEKI 39
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 34 VFRSEHAS*RIFWHRTTSSKKKQRYIKCYEA*LTIYIVGGKRRP 165
+F + H S + WH+ + ++Q YI+C A L + + + P
Sbjct: 259 IFDALHDS-LVLWHKNKTGPRQQTYIRCCVAFLVLLYIDNLKVP 301
>07_01_0871 -
7230228-7230338,7231055-7231348,7231972-7232148,
7232513-7232551,7232734-7234057,7238145-7238189,
7238456-7238498,7238680-7238716,7239035-7239325,
7239634-7239685,7239690-7239773,7240064-7240137,
7240703-7241641
Length = 1169
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 391 ACPTPEQISVFISSASLISHSEPVLPYGTKAK 296
A P ++VF+ +SHS P+L Y T+A+
Sbjct: 272 AMPNVHTLAVFVMVYGYVSHSLPLLQYFTEAR 303
>07_03_0732 +
21050941-21051811,21053676-21053720,21053931-21053942,
21054056-21054067,21054429-21054554,21054727-21054857,
21054939-21055149,21055237-21055474,21055557-21055707,
21055810-21055895,21055928-21055976
Length = 643
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -2
Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNA 422
Y+ NK + ILF P R+NV+ ++ +++ +VNA
Sbjct: 458 YMPNKSLDTILFDPDRSNVLDWWKRLK--IVNA 488
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 64 IFWHRTTSSKKKQRYIKCYEA*LTIYIVGGKRRP 165
+ WH+ + ++Q YI+C A L + + + P
Sbjct: 189 VLWHKNKTGPRQQTYIRCCVAFLVLLYIDNLKVP 222
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 367 SVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEEKATAETV 221
SVFI+ H YG P++ P + P+K E + +AE +
Sbjct: 52 SVFIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRSAEAL 100
>05_04_0052 - 17515344-17517353
Length = 669
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 299 EAKCGP*TEC-YQRTGETRRKGDGG 228
E C P YQR+G +RR GDGG
Sbjct: 637 EDVCNPVMSAVYQRSGGSRRDGDGG 661
>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
Length = 574
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 299 EAKCGP*TECYQRTGETRRKGDGGDGLTLMSLNHIIF 189
+ KCGP TE Y++ E + G G +M N++++
Sbjct: 156 QKKCGPHTESYKKAIEQLK---AGQGAKVMECNYLVW 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,072
Number of Sequences: 37544
Number of extensions: 227000
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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