Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 58   6e-09
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_47493| Best HMM Match : Helicase_C (HMM E-Value=1.3e-16)            27   7.1  
SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1)                    27   7.1  
SB_6069| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         27   9.4  

>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 23/56 (41%), Positives = 41/56 (73%)
 Frame = -2

Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFIS 353
           +LANK+TE+ILFKP++  V  Y+ Q+ +L+    Y+ ED+ I+ CP+ +Q+S+ ++
Sbjct: 474 FLANKDTEYILFKPVKTKVQEYYKQMNELIAET-YTEEDSHIIGCPSIQQVSLLLA 528


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 307 TKAKPSVVRKPSVTSVPEKLEEKATA 230
           T+ +PS  RKPS  S PE+ +++A A
Sbjct: 733 TRGRPSTGRKPSAKSCPEQDKKQAPA 758


>SB_47493| Best HMM Match : Helicase_C (HMM E-Value=1.3e-16)
          Length = 252

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 233 GGDGLTLMSLNHIIFCNK*YGPE 165
           GG GL LMS + +IF +  Y P+
Sbjct: 70  GGQGLNLMSADTVIFVDSDYNPQ 92


>SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1)
          Length = 411

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 337 SHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEEKAT 233
           SHS+ V  Y TKA PSV ++   T V       AT
Sbjct: 62  SHSKSVTRYLTKAAPSVTQRDRTTLVTYNATRVAT 96


>SB_6069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 457 YFVQIEQLLVNAGYSYEDTLIVACPTPEQIS 365
           Y+ Q+ +L+    Y+ ED+ I+ CP+ +Q S
Sbjct: 6   YYKQMNELIAET-YTEEDSHIIGCPSIQQFS 35


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 371 LLRSGTRDNQSILVRVASVHQKLFYLDEVADNVI 472
           L +    D Q+ LVR   +HQ+L +    AD+ +
Sbjct: 110 LAQRQNEDAQNFLVRALEIHQRLLFSSAAADSPV 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,176
Number of Sequences: 59808
Number of extensions: 274380
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)