Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D09f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF349676-1|AAK66974.1| 828|Homo sapiens vesicle docking protein... 62 1e-09
AF332595-1|AAK06848.1| 828|Homo sapiens tethering factor SEC34 ... 62 1e-09
AL606514-2|CAH73267.1| 828|Homo sapiens component of oligomeric... 60 3e-09
AL139326-1|CAH72888.1| 828|Homo sapiens component of oligomeric... 60 3e-09
BC072435-1|AAH72435.1| 506|Homo sapiens CDK5 regulatory subunit... 29 9.9
BC041085-1|AAH41085.1| 865|Homo sapiens leucine-rich repeats an... 29 9.9
BC009957-1|AAH09957.1| 506|Homo sapiens CDK5 regulatory subunit... 29 9.9
AK223387-1|BAD97107.1| 506|Homo sapiens CDK5 regulatory subunit... 29 9.9
AK093100-1|BAC04055.1| 418|Homo sapiens protein ( Homo sapiens ... 29 9.9
AK023722-1|BAB14657.1| 506|Homo sapiens protein ( Homo sapiens ... 29 9.9
AF343090-1|AAK69655.1| 434|Homo sapiens HSF-27 protein protein. 29 9.9
AB062433-1|BAB93496.1| 506|Homo sapiens OK/SW-cl.114 protein. 29 9.9
>AF349676-1|AAK66974.1| 828|Homo sapiens vesicle docking protein
SEC34 protein.
Length = 828
Score = 62.1 bits (144), Expect = 1e-09
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = -2
Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFIS 353
YL+NK+TEFILFKP+RNN+ F + LL +S ED I+ACP+ EQ+S+ +S
Sbjct: 771 YLSNKDTEFILFKPVRNNIQQVFQKFHALL-KEEFSPEDIQIIACPSMEQLSLLLS 825
>AF332595-1|AAK06848.1| 828|Homo sapiens tethering factor SEC34
protein.
Length = 828
Score = 62.1 bits (144), Expect = 1e-09
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = -2
Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFIS 353
YL+NK+TEFILFKP+RNN+ F + LL +S ED I+ACP+ EQ+S+ +S
Sbjct: 771 YLSNKDTEFILFKPVRNNIQQVFQKFHALL-KEEFSPEDIQIIACPSMEQLSLLLS 825
>AL606514-2|CAH73267.1| 828|Homo sapiens component of oligomeric
golgi complex 3 protein.
Length = 828
Score = 60.5 bits (140), Expect = 3e-09
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = -2
Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFI 356
YL+NK+TEFILFKP+RNN+ F + LL +S ED I+ACP+ EQ+S+ +
Sbjct: 771 YLSNKDTEFILFKPVRNNIQQVFQKFHALL-KEEFSPEDIQIIACPSMEQLSLLL 824
>AL139326-1|CAH72888.1| 828|Homo sapiens component of oligomeric
golgi complex 3 protein.
Length = 828
Score = 60.5 bits (140), Expect = 3e-09
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = -2
Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFI 356
YL+NK+TEFILFKP+RNN+ F + LL +S ED I+ACP+ EQ+S+ +
Sbjct: 771 YLSNKDTEFILFKPVRNNIQQVFQKFHALL-KEEFSPEDIQIIACPSMEQLSLLL 824
>BC072435-1|AAH72435.1| 506|Homo sapiens CDK5 regulatory subunit
associated protein 3 protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 490 LFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTP-EQISVFISSASLISHSEPVLP 314
L K + + + +Q L A Y+ ++ C +P EQ+ + +S V
Sbjct: 182 LVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNST-VYE 240
Query: 313 YGTKAKPSVVRKPSVTSVPEKLEEKA 236
+ T +PSVV +P + +PE++ E A
Sbjct: 241 WRTGTEPSVVERPHLEELPEQVAEDA 266
>BC041085-1|AAH41085.1| 865|Homo sapiens leucine-rich repeats and
IQ motif containing 2 protein.
Length = 865
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 397 IVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLE--EKATAE 227
++ CP P IS + + HS P T+ K S ++KP T PE E +AT+E
Sbjct: 481 LLPCPEPTIISAILKDDN---HSLTFFPESTEQKQSDIKKPENTQ-PENKETISQATSE 535
>BC009957-1|AAH09957.1| 506|Homo sapiens CDK5 regulatory subunit
associated protein 3 protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 490 LFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTP-EQISVFISSASLISHSEPVLP 314
L K + + + +Q L A Y+ ++ C +P EQ+ + +S V
Sbjct: 182 LVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNST-VYE 240
Query: 313 YGTKAKPSVVRKPSVTSVPEKLEEKA 236
+ T +PSVV +P + +PE++ E A
Sbjct: 241 WRTGTEPSVVERPHLEELPEQVAEDA 266
>AK223387-1|BAD97107.1| 506|Homo sapiens CDK5 regulatory subunit
associated protein 3 isoform b variant protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 490 LFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTP-EQISVFISSASLISHSEPVLP 314
L K + + + +Q L A Y+ ++ C +P EQ+ + +S V
Sbjct: 182 LVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNST-VYE 240
Query: 313 YGTKAKPSVVRKPSVTSVPEKLEEKA 236
+ T +PSVV +P + +PE++ E A
Sbjct: 241 WRTGTEPSVVERPHLEELPEQVAEDA 266
>AK093100-1|BAC04055.1| 418|Homo sapiens protein ( Homo sapiens
cDNA FLJ35781 fis, clone TESTI2005395. ).
Length = 418
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 397 IVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLE--EKATAE 227
++ CP P IS + + HS P T+ K S ++KP T PE E +AT+E
Sbjct: 177 LLPCPEPTIISAILKDDN---HSLTFFPESTEQKQSDIKKPENTQ-PENKETISQATSE 231
>AK023722-1|BAB14657.1| 506|Homo sapiens protein ( Homo sapiens
cDNA FLJ13660 fis, clone PLACE1011586, highly similar to
Rattus norvegicus clone C53 CDK5 activator-binding
protein mRNA. ).
Length = 506
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 490 LFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTP-EQISVFISSASLISHSEPVLP 314
L K + + + +Q L A Y+ ++ C +P EQ+ + +S V
Sbjct: 182 LVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNST-VYE 240
Query: 313 YGTKAKPSVVRKPSVTSVPEKLEEKA 236
+ T +PSVV +P + +PE++ E A
Sbjct: 241 WRTGTEPSVVERPHLEELPEQVAEDA 266
>AF343090-1|AAK69655.1| 434|Homo sapiens HSF-27 protein protein.
Length = 434
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 490 LFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTP-EQISVFISSASLISHSEPVLP 314
L K + + + +Q L A Y+ ++ C +P EQ+ + +S V
Sbjct: 182 LVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNST-VYE 240
Query: 313 YGTKAKPSVVRKPSVTSVPEKLEEKA 236
+ T +PSVV +P + +PE++ E A
Sbjct: 241 WRTGTEPSVVERPHLEELPEQVAEDA 266
>AB062433-1|BAB93496.1| 506|Homo sapiens OK/SW-cl.114 protein.
Length = 506
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 490 LFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTP-EQISVFISSASLISHSEPVLP 314
L K + + + +Q L A Y+ ++ C +P EQ+ + +S V
Sbjct: 182 LVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNST-VYE 240
Query: 313 YGTKAKPSVVRKPSVTSVPEKLEEKA 236
+ T +PSVV +P + +PE++ E A
Sbjct: 241 WRTGTEPSVVERPHLEELPEQVAEDA 266
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,086,968
Number of Sequences: 237096
Number of extensions: 1302421
Number of successful extensions: 6464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6460
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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