Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-4|AAT81182.1|  794|Caenorhabditis elegans Conserved oli...    31   0.66 
AB212858-1|BAE66673.1|  792|Caenorhabditis elegans COGC-3 protein.     31   0.66 
Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    27   6.2  
U42841-6|AAM97956.1|  404|Caenorhabditis elegans Gex interacting...    27   8.1  
U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024852-4|AAT81182.1|  794|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 3, isoform a
           protein.
          Length = 794

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFIS 353
           Y+   ETE IL  P+R  V+  F ++     +  Y  E   I   P  +Q+ + ++
Sbjct: 739 YIGVPETEEILLSPVRKRVIDIFTRVIS-FASKTYDAESLAIAGLPNVQQLILLLN 793


>AB212858-1|BAE66673.1|  792|Caenorhabditis elegans COGC-3 protein.
          Length = 792

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFIS 353
           Y+   ETE IL  P+R  V+  F ++     +  Y  E   I   P  +Q+ + ++
Sbjct: 737 YIGVPETEEILLSPVRKRVIDIFTRVIS-FASKTYDAESLAIAGLPNVQQLILLLN 791


>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 274 SVTSVPEK--LEEKATAETV*HLCRLIILFFVINDTDPRVVVFLLRYK*LVMLH 119
           +VTS+ E+  L    T  TV   C  +    V ND   R  V   RYK +  LH
Sbjct: 31  TVTSISEEKHLTGSHTVYTVEIECNPVASHLVANDVSRRTFVLSTRYKEMTKLH 84


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -2

Query: 412 YEDTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEEKAT 233
           YE   +   PTP        S ++ +  E  +   + A P+ + KPS T+ P  L+  + 
Sbjct: 284 YEKPTLTTEPTPVTTEKSTVSTTISTSLETTIMQASSASPTSI-KPSTTTEPSPLQASSK 342

Query: 232 AET 224
             T
Sbjct: 343 PAT 345


>U42841-6|AAM97956.1|  404|Caenorhabditis elegans Gex interacting
           protein protein16, isoform h protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 385 PTPEQISVFISSASLISHSEPVLP-YGTKAKPSVVRKPSVTSVPEKLEEKATAETV 221
           P  ++    +    L+   + + P   T+   SVV+KP+VT   ++ EE    E V
Sbjct: 16  PVDDKPRSIMKRNDLVRREQMLYPTVDTQVVKSVVKKPTVTETVQRFEETRRTEEV 71


>U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical
           protein M02D8.4c protein.
          Length = 538

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 448 QIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEP 323
           Q EQ     GYS+ DTL+  C        F  ++ L  H+ P
Sbjct: 450 QKEQFSDGVGYSWIDTLMKYCAAKITDKEFSQASKLFPHNTP 491


>U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical
           protein M02D8.4a protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 448 QIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEP 323
           Q EQ     GYS+ DTL+  C        F  ++ L  H+ P
Sbjct: 450 QKEQFSDGVGYSWIDTLMKYCAAKITDKEFSQASKLFPHNTP 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,263
Number of Sequences: 27780
Number of extensions: 213688
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)