Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    39   0.002
At1g67710.1 68414.m07727 two-component responsive regulator fami...    27   7.7  

>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -2

Query: 520 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYED 404
           YL N  T  ILFKPI+ N+V    Q+E LL  A YS E+
Sbjct: 727 YLQNPSTRTILFKPIKTNIVEAHTQVESLL-KAEYSAEE 764


>At1g67710.1 68414.m07727 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver
           domain; contains similarity to response regulator
           proteins from [Arabidopsis thaliana]
          Length = 521

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -2

Query: 445 IEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVT 266
           + ++L +    YE++ +   P P Q S   +SA  +   E   PY T A  S V      
Sbjct: 352 VPEVLESKPVLYENSFLQQQPLPSQSSYVANSAPSLMEEEMKPPYETPAGGSSVNADEFL 411

Query: 265 SVPEKL 248
              +K+
Sbjct: 412 MPQDKI 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,339,163
Number of Sequences: 28952
Number of extensions: 189313
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)