Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 33 0.020
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 31 0.14
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 30 0.24
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 27 1.7
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 3.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.8
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 6.8
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 9.0
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 9.0
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 33.5 bits (73), Expect = 0.020
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 120 PAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWK 236
PAE+ +++L + D + S H+ +LV+++++LWK
Sbjct: 305 PAEITNLVLTHLDAPSLCAVSQVSHHWYKLVSSNEELWK 343
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 105 SIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTD 221
++ +LP E++ II D + +L+ TCK++ +L++ D
Sbjct: 30 TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDD 68
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +3
Query: 105 SIYSLPAEVISIILKN-----NDCQEILNFSSTCKHFNELVNTD 221
+I LP EV+ +IL+N +D + + + + TCKHF + + D
Sbjct: 111 NILKLPDEVLLVILENCIRDLHDLRYLSSIALTCKHFAKALRAD 154
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 238 SFHNCWSVFTNSLKCLQ-VELKLSISWQSLFFSIIEITSAGK 116
S+ CWSVF +LK L VE + + L + I I A +
Sbjct: 277 SWRECWSVFYETLKILSLVETRYEFEHRDLHWGNILIRKADR 318
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 348 VFSELKTMSPTHYCKRDDLTKQDVRDFFNVAI 443
V ++KT +P HYC R + K + + NV +
Sbjct: 33 VIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQV 64
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 235 FHNCWSVFTNSLKCLQVELKLSISW 161
FHN WS + S+ L V L L W
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIW 248
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 214 FTNSLKCLQVELKLSISWQSLFFSIIEITSAGK 116
F SL+C +LK S + +FFS + S+ K
Sbjct: 591 FGVSLQCFVEKLKFEYSLKEIFFSFLSWASSPK 623
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 306 WLEEI-KGFYYIKNYVFSELKTMSPTHY 386
W+ ++ KG YY +Y+FS LK +Y
Sbjct: 559 WVSKVFKGTYYRLSYLFSSLKYTLAENY 586
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 227 LLVSVY*FIKMFASGTKIEYFLAIIIFQYYRNYFCW 120
LLV V ++ +F + YFL I+F +Y C+
Sbjct: 41 LLVYVTRYLNLFWRYKSLYYFLMRIVFIASESYICY 76
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 117 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELI 257
LP E+ IL D + + + KH+ EL + D +W ++ I
Sbjct: 113 LPVEISFRILSFLDARSLCQAAQVSKHWKELAD-DDVIWHRMCEQHI 158
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 255 IPDAAFVVVESDCHDGDWLEEIKGFYYIKN 344
+ + F++ + D +DGD L E+ Y I+N
Sbjct: 158 VEEYEFILAQIDNYDGDQLGELMKKYDIRN 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,413
Number of Sequences: 5004
Number of extensions: 37926
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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