Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 32 0.24
10_08_0274 + 16426892-16427101,16427193-16427572,16427655-164279... 32 0.24
09_02_0540 + 10410372-10411331 31 0.74
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 29 1.7
06_03_0636 + 22983898-22985043 29 1.7
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 29 3.0
02_02_0333 + 9042393-9043610 28 4.0
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 6.9
09_03_0033 - 11745720-11745876,11746407-11746555 27 9.1
>11_01_0268 -
2029007-2029464,2029521-2029615,2030815-2031077,
2031154-2031279,2031404-2032996
Length = 844
Score = 32.3 bits (70), Expect = 0.24
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 36 WSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQE-ILNFSSTCKHFNELV 212
W + S T S D +++ + I SL +SI K + +LNF +C ELV
Sbjct: 514 WFNLSSQTRSID--NVYLDVGHVPITSLRKLELSIAFKERKGRHALLNFFRSCTELKELV 571
Query: 213 NTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYV 350
LW+E D + E D H DW +K +K+++
Sbjct: 572 -----LWRE-------DKVYFEEECDVHSDDWSSALKDIACLKSHL 605
>10_08_0274 +
16426892-16427101,16427193-16427572,16427655-16427927,
16428315-16428390,16428476-16428655
Length = 372
Score = 32.3 bits (70), Expect = 0.24
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 183 STCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYVFSEL 362
ST F E T W++K++E+ +++ H G E Y+ + + S+L
Sbjct: 176 STLAPFYESDTTISAYWRDKIREMTESISYLCTRKVSHGGLANRE----SYVLD-LDSKL 230
Query: 363 KTMSPTHYCKRDDLTKQDVRDFFNV 437
K ++ Y T+ DV DFF++
Sbjct: 231 KLINVARYSTDGSTTRDDVVDFFDL 255
>09_02_0540 + 10410372-10411331
Length = 319
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 96 EELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 233
EE SLP++V+++IL+ +F+ TC+H+ V+ W
Sbjct: 2 EERDWSSLPSDVLAVILERLRWSSHPSFALTCRHWRSAVSPFYPAW 47
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 117 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQ 227
LP E++ +I+ N + + F + CK ++E++N +Q
Sbjct: 365 LPVELLELIVSNLSLVDRIRFPTVCKAWSEVLNPIEQ 401
>06_03_0636 + 22983898-22985043
Length = 381
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 252 LIPDAAFVVVESDCHDGD 305
+IPD VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 162 QEILNFSSTCKHFNELVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 329
QE+ + + + N LV+ D +L+K +L+ D + VVV DC DW + F
Sbjct: 904 QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956
>02_02_0333 + 9042393-9043610
Length = 405
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +3
Query: 117 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKE 251
LP +++ +L ++ S CK ++E+V+ +Q W + + +
Sbjct: 44 LPDDLLEKVLSFLPVASVIRSGSVCKRWHEIVHARRQTWSKMVPQ 88
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 408 KQDVRDFFNVAISTKMSLAYAINILQDF 491
K D+ +FF + + KMS+A N LQ F
Sbjct: 2192 KDDITEFFRLPLQEKMSVAIPPNGLQGF 2219
>09_03_0033 - 11745720-11745876,11746407-11746555
Length = 101
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +3
Query: 99 ELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKE 251
E + PA+VI+ + DC ++L+ S C+ + ++ W+++ E
Sbjct: 19 EAAALRAPADVIARVFSQLDCVDLLSCSLVCRQWYRDSAELREEWRKEYME 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,920
Number of Sequences: 37544
Number of extensions: 192022
Number of successful extensions: 407
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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