Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.8  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   7.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 73  KS*LVVVIDLDDHPLVTASKLYN 5
           KS L  V+DL+D+ L + + L N
Sbjct: 384 KSLLANVLDLEDNALASHNNLLN 406


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 204 ELVNTDQQLWKEKLKELIPDAAFVV-VESDCHDG 302
           E V+ D+Q  + +  +L+P+  +++ V   C  G
Sbjct: 31  EAVSNDRQSLEARSADLVPEPRYIIDVPPRCPPG 64


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 50  NNYN*LRFTKNTYN 91
           NNYN   +  N YN
Sbjct: 99  NNYNNYNYNNNNYN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,649
Number of Sequences: 438
Number of extensions: 2580
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)