Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.73 
SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    28   0.97 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   3.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   6.8  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.0  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 367 CSKC*YSFNLYFGRIFIYPEPQ-PVALYYTYIRSKL 263
           CS C Y F  +  ++  Y  P  P++  Y +I S L
Sbjct: 501 CSSCKYPFQFFINKLPFYQSPSLPLSATYVWIASAL 536


>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 323 FYLSRTPARSIILYL-Y*IEVIKLLCCYQFLMRVHYQVNLYVLRLSKMTLKDTSKQKYI 150
           F++SRTP++++ +YL Y     K+L     + ++H   N   LRL   TLK + K  Y+
Sbjct: 25  FHVSRTPSKNLPVYLDYKQRGTKIL---TLIRKIHGDSNALRLRLIS-TLKMSPKDVYV 79


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
 Frame = +3

Query: 3   EPFFFFLTLWNPFTDTRSGGVINM---YLITFLC*FH*TGSDFLRTLLL---LASYI-FL 161
           E  FFFLT+   F    +   +N    YL TFL         F R   L   +A YI F 
Sbjct: 145 ETIFFFLTIL--FLSKLNSVPLNKKISYLYTFLLAIVSVLGFFTRITFLAFVIAPYIYFS 202

Query: 162 FRCIFERHFRQPQDVKINLIV 224
            RC F+++   P+D+ ++L +
Sbjct: 203 VRC-FKKNVNNPKDIFLHLCI 222


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 65  NKYVPNNFSLLISLDRVGFFKNVAFISFV-YIFV*MYL 175
           N   PN     + LD + F K +A +SFV  +F+ +YL
Sbjct: 377 NLLYPNLRPSQLYLDSMSFLKTMAILSFVSIVFIAIYL 414


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -2

Query: 322 FIYPEPQPV----ALYYTYIRSKL*NYCVVISS 236
           F Y E  PV     ++YTY R +L   CV++S+
Sbjct: 73  FPYKEFDPVLKFPGIHYTYSRERLWGTCVILST 105


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 394 IKNFKVFCECSKC*YSFNLYFGRIFIYPEPQPVALYYTYI-RSKL*NY 254
           ++  + FC C +  +SF  +   + IY E   + L  T I +  L NY
Sbjct: 571 VEAVEAFCACLESMFSFKAWKTLLIIYSEDNNIELVLTAIAKLTLYNY 618


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 114 SDFLRTLLLLASYIFLFRCIFERHFRQPQ 200
           +D + +L      I LF C+++R +RQPQ
Sbjct: 430 ADQMVSLTYACGNISLFFCLYKRLWRQPQ 458


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 394 IKNFKV-FCECSKC*YSFNLYFGRIFIYPEPQPVALYYT 281
           +K + + FC C+     F + FG IF+Y  P  +  + T
Sbjct: 49  VKRYLIYFCYCANFIALFRVIFGTIFVY-SPDGITPFMT 86


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 168  CIFERHFRQPQDVKINLIVH 227
            CI +R FR  Q   +NLIVH
Sbjct: 1256 CIDKREFRLAQICGLNLIVH 1275


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -3

Query: 294 HYIILILDRSYKIIVLLSVLNAC 226
           H +I +++  YK+I++ ++ N+C
Sbjct: 20  HTVIELINHGYKVIIVDNLCNSC 42


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 450 DLLEAKQRTDQL-KRSGRSELRILKSSVSVLSANTVLICTSV 328
           D+   K+  +++ K+S  +ELR LKS  + LS  T+ +   +
Sbjct: 83  DMENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLSNEI 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,345
Number of Sequences: 5004
Number of extensions: 38926
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)