Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0067 - 673381-673387,675388-678131                               28   4.0  
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387     28   5.2  
03_02_0692 - 10438088-10438123,10438247-10438317,10438551-104386...    27   9.1  

>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 123 LRTLLLLASYIFLFRCIFERHFRQPQDVKI 212
           LRTL++L S+IF   C  +  FR+ +++++
Sbjct: 565 LRTLIVLRSFIFSSSCFQDEFFRKIRNLRV 594


>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
          Length = 487

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 60  GVINMYLITFLC*FH*TGSDFLRTLLLLASYIFLFRCIFERHFRQPQDVK 209
           GV+ M  I+        G+ +L   +  AS++F++ C+ E   R  +D++
Sbjct: 432 GVVTMTFISLYGAITMAGAFYLYAAIAAASFVFIYACLPETRGRSLEDME 481


>03_02_0692 -
           10438088-10438123,10438247-10438317,10438551-10438620,
           10439551-10439919
          Length = 181

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 YGLGFGINKNSTEVQIKTVLALRTLTEDFKILN 394
           Y  G+G+NKN  + QI T  A R  +  +K+ N
Sbjct: 111 YRSGYGVNKNEHKAQIWTEKASRYRSTVWKVSN 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,845
Number of Sequences: 37544
Number of extensions: 210927
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)