Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)             29   1.8  
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 27   9.4  
SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)                  27   9.4  

>SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)
          Length = 663

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 8   FFFFFN--AVESIYGYPVRGGNKYVPNNFSLLISLDRVGFF 124
           +FF  N    E IY +   GGN Y P NF   I +D + FF
Sbjct: 100 YFFDRNRTVAECIYQFYQNGGNIYRPENFPEQILVDDLEFF 140


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 251 CCYQFLMRVHYQVNLYVLRLSKMTLKDTS 165
           CC + + RVH++V+ Y  +L+++ L D S
Sbjct: 519 CCGEKMHRVHWKVHKYRGKLARVRLVDDS 547


>SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)
          Length = 482

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 5   TFFFFFNAVESIYGY 49
           TFFFFF    S++GY
Sbjct: 221 TFFFFFGVYRSVFGY 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,480
Number of Sequences: 59808
Number of extensions: 264773
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)