Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z81104-1|CAB70255.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.     28   4.7  
AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta p...    28   4.7  
AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha ...    28   4.7  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 47  YPVRGGNKYVPNNFSLLISLDR-VGFFKNVAFISFVYIFV 163
           Y V  GN Y  N+F +L   D  VG + N A + F  IF+
Sbjct: 54  YTVFHGNSYRDNSFYMLYCADAIVGIYINTAEVIFGRIFI 93


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 326 NFYLSRTPARSIILYLY*IEVIKLLCCYQFLMRVHYQVNLYVLRLSKMTLKDTS 165
           NFY+  T  RS I Y + +  +  L C+  +  V   + LY ++   + + +TS
Sbjct: 169 NFYIDTTYGRSNI-YYFLMPALIFLTCFNIVFNVLAGIRLYNMKKKGVKVPETS 221


>Z81104-1|CAB70255.1|  329|Caenorhabditis elegans Hypothetical
           protein M199.1 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 330 VEFLFIPNPSP*HYIILILDRSYKIIVLLSVLNACA 223
           +E L+IP  +      LI    YKIIVLL+V + CA
Sbjct: 47  IELLYIPIINIIFKTKLIKHTCYKIIVLLAVTDMCA 82


>Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical
           protein F11C1.6b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 162 TKIYTKLIKATF---LKNPTLSSEINKEKLLGTYLLPP 58
           TKI T+ IK  +   L++PTLSS  N++  +  +++ P
Sbjct: 82  TKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRP 119


>Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical
           protein F11C1.6a protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 162 TKIYTKLIKATF---LKNPTLSSEINKEKLLGTYLLPP 58
           TKI T+ IK  +   L++PTLSS  N++  +  +++ P
Sbjct: 162 TKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRP 199


>AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 162 TKIYTKLIKATF---LKNPTLSSEINKEKLLGTYLLPP 58
           TKI T+ IK  +   L++PTLSS  N++  +  +++ P
Sbjct: 162 TKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRP 199


>AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta
           protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 162 TKIYTKLIKATF---LKNPTLSSEINKEKLLGTYLLPP 58
           TKI T+ IK  +   L++PTLSS  N++  +  +++ P
Sbjct: 82  TKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRP 119


>AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha
           protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 162 TKIYTKLIKATF---LKNPTLSSEINKEKLLGTYLLPP 58
           TKI T+ IK  +   L++PTLSS  N++  +  +++ P
Sbjct: 158 TKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFIMRP 195


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 117 DFLRTLLLLASYIFLFRCIFERHFRQPQDVKINLIVHTH*ELI--TTQ*FYN 266
           D ++ +    S+ + F  +FER +RQ  D+ +N  V T  E++   T  FYN
Sbjct: 206 DRIQDITAFTSFHYAFSNLFERQYRQAYDL-LNGDVRTWREILQTATYFFYN 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,670
Number of Sequences: 27780
Number of extensions: 211798
Number of successful extensions: 431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)