Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.62 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   5.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 111 GSDFLRTLLLLASYIFLFRCIFERHFRQP 197
           G   L T++L+   I++  C+   HFR P
Sbjct: 313 GKYLLFTMILVTLSIWITVCVLNVHFRSP 341


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 343 NLYFGRIFIYPEPQPVALYY 284
           N+YF  +FIY  P   ++ Y
Sbjct: 667 NMYFKDVFIYNRPNEESMNY 686


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 343 NLYFGRIFIYPEPQPVALYY 284
           N+YF  +FIY  P   ++ Y
Sbjct: 667 NMYFKDVFIYNRPNEESMNY 686


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 9   FFFFLTLWNPFTDTRSGGVI-NMYLIT 86
           FF FL  W P+      GV  N  L+T
Sbjct: 288 FFLFLLAWTPYATVALIGVYGNRELLT 314


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 9   FFFFLTLWNPFTDTRSGGVI-NMYLIT 86
           FF FL  W P+      GV  N  L+T
Sbjct: 288 FFLFLLAWTPYATVALIGVYGNRELLT 314


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 300 P*HYIILILDRSYKIIVLLSVLNACALS 217
           P HY+ L  D++   +V L++  +CA++
Sbjct: 139 PNHYLWLYKDKTILYMVKLTLKLSCAMN 166


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 352 YSFNLYFGRIFIYPEPQPVALYY 284
           Y+  LY+   +I   P PV +YY
Sbjct: 104 YNKKLYYNINYIEQIPIPVPVYY 126


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 352 YSFNLYFGRIFIYPEPQPVALYY 284
           Y+  LY+   +I   P PV +YY
Sbjct: 104 YNKKLYYNINYIEQIPIPVPVYY 126


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 352 YSFNLYFGRIFIYPEPQPVALYY 284
           Y+  LY+   +I   P PV +YY
Sbjct: 104 YNKKLYYNINYIEQIPIPVPVYY 126


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 352 YSFNLYFGRIFIYPEPQPVALYY 284
           Y+  LY+   +I   P PV +YY
Sbjct: 104 YNKKLYYNINYIEQIPIPVPVYY 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,377
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)