BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312D06f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25 SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44 SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 29 1.8 SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44) 28 4.1 SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8) 28 5.4 SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4) 28 5.4 SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) 27 7.1 SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_26697| Best HMM Match : EGF (HMM E-Value=7.5e-34) 27 9.4 >SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 882 Score = 32.3 bits (70), Expect = 0.25 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 349 SSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCFCSIRRPQVKELNKPRP 492 S CSI G+CS+H ++ + S++ ++ +CSI P V+ P P Sbjct: 753 SGYCSIYFASGYCSIHFASSVYFSIHLAS-GYCSILHPVVEVQLTPMP 799 Score = 27.9 bits (59), Expect = 5.4 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 334 IRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 426 ++ S CSI + G+CS+H ++ +CS+Y Sbjct: 712 VQYFASGYCSIHLASGYCSIHFAS-GYCSIY 741 >SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 617 Score = 31.5 bits (68), Expect = 0.44 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = -1 Query: 449 EQKHRVL--RYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 309 E +HR L +E KHR L ++QK Q+ + ++L+ ++ E+ +QLQ Sbjct: 391 EIRHRQLLKEQEELKHRKLLQEQQKLQHKKLQEEKLKHQKQEEEQQQLQ 439 >SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) Length = 430 Score = 29.5 bits (63), Expect = 1.8 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +1 Query: 313 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 426 S GC Y+ ++R SLC++ C F +H S+L F L+ Sbjct: 316 SVRGCRYVHNVRVSLCTL---CAFRYVH-SSLWFSELF 349 >SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 320 Score = 28.3 bits (60), Expect = 4.1 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Frame = +1 Query: 301 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL-------HRST-LCFCSLYRSTLCFCSIR 456 V S SC GC S R + S++ C C + H T C C + + C C + Sbjct: 25 VVSLSCRGCVVSLSCRDCVVSVSCLCRICHVVTVSNLSHDVTSSCLCHVVTVSYCVCIVL 84 Query: 457 RP 462 P Sbjct: 85 CP 86 >SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44) Length = 75 Score = 28.3 bits (60), Expect = 4.1 Identities = 12/49 (24%), Positives = 23/49 (46%) Frame = -1 Query: 458 RRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 312 R +Q H + R +Q H + RC +Q + + + R +QP ++ Sbjct: 23 RCTQQPHEMSRCTQQPHEMSRCTQQPHEMSRCTQPQHEMSRCTQQPNEM 71 >SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 150 Score = 28.3 bits (60), Expect = 4.1 Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Frame = -1 Query: 458 RRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLL 279 ++ +Q+ ++ + ++Q+ R+ + ++Q+P+ ++ R ++ +QP Q + P L Sbjct: 57 QQQQQQQQLQQQQQQQPRLQQQQQQQPRLKQQQQQQPRLKQQQQQPRLKQQQQQQP-RLK 115 Query: 278 VWQLERSCMKQGQLP--KEQRQQLDR 207 Q + +Q Q P K+Q+QQ R Sbjct: 116 QQQQQPRLQQQQQQPRLKQQQQQQPR 141 >SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8) Length = 235 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -1 Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216 KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ Sbjct: 139 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 198 Query: 215 LDR 207 L + Sbjct: 199 LQQ 201 >SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 177 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -1 Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216 KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ Sbjct: 31 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 90 Query: 215 LDR 207 L + Sbjct: 91 LQQ 93 >SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 176 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -1 Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216 KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ Sbjct: 30 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 89 Query: 215 LDR 207 L + Sbjct: 90 LQQ 92 >SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4) Length = 167 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -1 Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216 KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ Sbjct: 71 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 130 Query: 215 LDR 207 L + Sbjct: 131 LQQ 133 >SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) Length = 810 Score = 27.5 bits (58), Expect = 7.1 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +1 Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLYR-STLCFCSIRRP 462 T + C+ S+ +LRS +C++ C+L H++TL C+L +TLC S + Sbjct: 209 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKT 268 Query: 463 QVKEL 477 ++ L Sbjct: 269 TLRSL 273 Score = 27.5 bits (58), Expect = 7.1 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +1 Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLYR-STLCFCSIRRP 462 T + C+ S+ +LRS +C++ C+L H++TL C+L +TLC S + Sbjct: 347 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTADTTLCTLSSHKT 406 Query: 463 QVKEL 477 ++ L Sbjct: 407 TLRSL 411 Score = 27.5 bits (58), Expect = 7.1 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +1 Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLYR-STLCFCSIRRP 462 T + C+ S+ +LRS +C++ C+L H++TL C+L +TLC S + Sbjct: 596 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKT 655 Query: 463 QVKEL 477 ++ L Sbjct: 656 TLRSL 660 >SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1186 Score = 27.1 bits (57), Expect = 9.4 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +1 Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLC 411 T R C+ GC + SS S +V CG+ R C Sbjct: 734 TTRRCNPGGCKTHWFIGSSFTSCSVTCGYGVKERLVFC 771 >SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6863 Score = 27.1 bits (57), Expect = 9.4 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%) Frame = +1 Query: 325 CSYIRSLRSSLCSIAVYCGFCSLHRSTLCF-----CSLYRSTLCF 444 C +R +C CG C+L R +C+ C+L R +C+ Sbjct: 5848 CDMCNLVRRDMCY--PICGMCNLVRRDMCYKICGMCNLVRRDMCY 5890 >SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 291 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -2 Query: 346 VASVCRNNRSSCSYVRCC 293 VAS C++NRS+ +Y+RCC Sbjct: 134 VASRCQSNRST-NYLRCC 150 >SB_26697| Best HMM Match : EGF (HMM E-Value=7.5e-34) Length = 684 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = -2 Query: 55 CDGGEEKYDFVHFCKFVL 2 CDGG YDFV C VL Sbjct: 23 CDGGGNDYDFVSRCVVVL 40 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,335,349 Number of Sequences: 59808 Number of extensions: 191663 Number of successful extensions: 633 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 484 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 619 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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