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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   1.8  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44)                     28   4.1  
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)                   28   5.4  
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)              28   5.4  
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)                27   7.1  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_26697| Best HMM Match : EGF (HMM E-Value=7.5e-34)                   27   9.4  

>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 349 SSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCFCSIRRPQVKELNKPRP 492
           S  CSI    G+CS+H ++  + S++ ++  +CSI  P V+    P P
Sbjct: 753 SGYCSIYFASGYCSIHFASSVYFSIHLAS-GYCSILHPVVEVQLTPMP 799



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 334 IRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 426
           ++   S  CSI +  G+CS+H ++  +CS+Y
Sbjct: 712 VQYFASGYCSIHLASGYCSIHFAS-GYCSIY 741


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = -1

Query: 449 EQKHRVL--RYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 309
           E +HR L    +E KHR L  ++QK Q+  +  ++L+ ++  E+ +QLQ
Sbjct: 391 EIRHRQLLKEQEELKHRKLLQEQQKLQHKKLQEEKLKHQKQEEEQQQLQ 439


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 313 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 426
           S  GC Y+ ++R SLC++   C F  +H S+L F  L+
Sbjct: 316 SVRGCRYVHNVRVSLCTL---CAFRYVH-SSLWFSELF 349


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
 Frame = +1

Query: 301 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL-------HRST-LCFCSLYRSTLCFCSIR 456
           V S SC GC    S R  + S++  C  C +       H  T  C C +   + C C + 
Sbjct: 25  VVSLSCRGCVVSLSCRDCVVSVSCLCRICHVVTVSNLSHDVTSSCLCHVVTVSYCVCIVL 84

Query: 457 RP 462
            P
Sbjct: 85  CP 86


>SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44)
          Length = 75

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 458 RRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 312
           R  +Q H + R  +Q H + RC +Q  + +     +    R  +QP ++
Sbjct: 23  RCTQQPHEMSRCTQQPHEMSRCTQQPHEMSRCTQPQHEMSRCTQQPNEM 71


>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = -1

Query: 458 RRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLL 279
           ++ +Q+ ++ + ++Q+ R+ + ++Q+P+      ++ R ++  +QP   Q +   P  L 
Sbjct: 57  QQQQQQQQLQQQQQQQPRLQQQQQQQPRLKQQQQQQPRLKQQQQQPRLKQQQQQQP-RLK 115

Query: 278 VWQLERSCMKQGQLP--KEQRQQLDR 207
             Q +    +Q Q P  K+Q+QQ  R
Sbjct: 116 QQQQQPRLQQQQQQPRLKQQQQQQPR 141


>SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)
          Length = 235

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216
           KE+  + + +  KEL  ++ M +Q  QLQ +    +  +V Q ++   +Q Q  + Q+QQ
Sbjct: 139 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 198

Query: 215 LDR 207
           L +
Sbjct: 199 LQQ 201


>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216
           KE+  + + +  KEL  ++ M +Q  QLQ +    +  +V Q ++   +Q Q  + Q+QQ
Sbjct: 31  KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 90

Query: 215 LDR 207
           L +
Sbjct: 91  LQQ 93


>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216
           KE+  + + +  KEL  ++ M +Q  QLQ +    +  +V Q ++   +Q Q  + Q+QQ
Sbjct: 30  KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 89

Query: 215 LDR 207
           L +
Sbjct: 90  LQQ 92


>SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)
          Length = 167

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 392 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 216
           KE+  + + +  KEL  ++ M +Q  QLQ +    +  +V Q ++   +Q Q  + Q+QQ
Sbjct: 71  KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 130

Query: 215 LDR 207
           L +
Sbjct: 131 LQQ 133


>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
          Length = 810

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +1

Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLYR-STLCFCSIRRP 462
           T  +  C+  S+  +LRS +C++      C+L  H++TL    C+L   +TLC  S  + 
Sbjct: 209 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKT 268

Query: 463 QVKEL 477
            ++ L
Sbjct: 269 TLRSL 273



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +1

Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLYR-STLCFCSIRRP 462
           T  +  C+  S+  +LRS +C++      C+L  H++TL    C+L   +TLC  S  + 
Sbjct: 347 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTADTTLCTLSSHKT 406

Query: 463 QVKEL 477
            ++ L
Sbjct: 407 TLRSL 411



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +1

Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLYR-STLCFCSIRRP 462
           T  +  C+  S+  +LRS +C++      C+L  H++TL    C+L   +TLC  S  + 
Sbjct: 596 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKT 655

Query: 463 QVKEL 477
            ++ L
Sbjct: 656 TLRSL 660


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 298 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLC 411
           T R C+  GC     + SS  S +V CG+    R   C
Sbjct: 734 TTRRCNPGGCKTHWFIGSSFTSCSVTCGYGVKERLVFC 771


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +1

Query: 325  CSYIRSLRSSLCSIAVYCGFCSLHRSTLCF-----CSLYRSTLCF 444
            C     +R  +C     CG C+L R  +C+     C+L R  +C+
Sbjct: 5848 CDMCNLVRRDMCY--PICGMCNLVRRDMCYKICGMCNLVRRDMCY 5890


>SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -2

Query: 346 VASVCRNNRSSCSYVRCC 293
           VAS C++NRS+ +Y+RCC
Sbjct: 134 VASRCQSNRST-NYLRCC 150


>SB_26697| Best HMM Match : EGF (HMM E-Value=7.5e-34)
          Length = 684

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 55 CDGGEEKYDFVHFCKFVL 2
          CDGG   YDFV  C  VL
Sbjct: 23 CDGGGNDYDFVSRCVVVL 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,349
Number of Sequences: 59808
Number of extensions: 191663
Number of successful extensions: 633
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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