Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.16c |spt4||transcription elongation factor complex subu...    29   0.32 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   1.3  
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    26   3.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   6.8  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   9.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   9.0  

>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 294 RLVERQSTRCHCCNWHVPHSCLSRWGCNIDGVSTIE 187
           +L   +S  C  C   +PHS  +  GC  DGV  +E
Sbjct: 3   KLNRTRSRACLICGIVLPHSVFANKGCPNDGVDDVE 38


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 382 FSNRSYEYPLSRSWHVVMQDESTQRGNWHELAI 480
           F  + YEYP++    V+ +  +  RG WHE+A+
Sbjct: 491 FETQWYEYPVN----VMNRVNNALRGKWHEVAV 519


>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 VDIASPSGEARMRDMPIATMAPGALSFYQPLK 300
           VD+ +PS E+ MR   +  +  G  SF+  +K
Sbjct: 5   VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVK 36


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 305 MNSLPITSLATNINPTVLSMAQGYIPSVIAATNIPYLDPG 424
           M+S  +TSL  + NP +    QG  PS I   N+  +  G
Sbjct: 65  MDSSLMTSLPHSRNPPIFEAIQGEQPSDIDTLNLKKVKSG 104


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 349 YCSIDGTRIHTFSNRSYEYP 408
           YC+ DG  +  F ++ Y YP
Sbjct: 138 YCNSDGVAVKPFPSKDYCYP 157


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 333 PPISTLLFYRWHKDT 377
           PPIS  LFY +++DT
Sbjct: 94  PPISAHLFYTYNRDT 108


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 336 PISTLLFYRWHKDTYLQ*SQLR 401
           P+  L FYR+  D Y++  Q R
Sbjct: 688 PVDELFFYRFFNDKYIKGKQAR 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,482
Number of Sequences: 5004
Number of extensions: 49595
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)