BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312D05f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 30 1.0 SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 29 3.1 SB_59011| Best HMM Match : DUF1279 (HMM E-Value=0.51) 28 4.1 SB_51795| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_9899| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 27 7.1 SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1) 27 7.1 SB_48776| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 27 7.1 SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_6112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) Length = 458 Score = 30.3 bits (65), Expect = 1.0 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +3 Query: 192 SYLHRRYCIPIWRGTNEGHANCNNGTWCFVFLPTAKSL*TRC---QLLHWPPISTLLFYR 362 +Y +R C P+ + TN C TWC + TRC + PP++ +YR Sbjct: 57 NYYRKRRCPPLTKCTNYRKRRCPPLTWCTNYRKRRCPPLTRCTNYRKRRCPPLNKCTYYR 116 >SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) Length = 965 Score = 28.7 bits (61), Expect = 3.1 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +3 Query: 159 NGLQN*FLVLRSYLHRRYCIPIWRGTNEGHANCNNGTWCFVFLPTAKSL*TRCQ 320 +G Q+ F +S R + WRGT G + + + CF +PT K + C+ Sbjct: 599 HGRQSTFFENKSLTARAFENKGWRGTGRGRTSEVSNSSCFDRVPTTKERESVCE 652 >SB_59011| Best HMM Match : DUF1279 (HMM E-Value=0.51) Length = 235 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 414 SILARSHAGRVYSTRQLARVGYLVQEATER 503 S +R HA +TR++A V ++QE TER Sbjct: 44 STSSRMHAAHSMATRRVAEVDAVIQENTER 73 >SB_51795| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 88 Score = 27.9 bits (59), Expect = 5.4 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 88 YRLYEYLGYWYTEANPLKLT 147 YR++E+LGYW E +++T Sbjct: 32 YRMFEFLGYWMFELLRIRVT 51 >SB_9899| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 195 Score = 27.9 bits (59), Expect = 5.4 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +1 Query: 109 GYWYTEANPLKLTQNGKMDFKIDFSYFDRTYTVDIASPSGEARMRDMPIATMAPGALSFY 288 GY + P+KL +NG +KI + V A + + I+TM AL Y Sbjct: 24 GYAFKPPEPVKLAKNGVESWKIWKQLYQHYCIVSNADSHSPQFKKSLLISTMGIEALQIY 83 >SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) Length = 1164 Score = 27.5 bits (58), Expect = 7.1 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 202 TVDIASPSGEARMRDMPIATMAPGALSFYQP 294 TV I P G A D +AT+ +LS Y P Sbjct: 532 TVQIRKPDGAALDADQKVATLITASLSRYPP 562 >SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6119 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 Query: 384 EGMYPCAIDRTVGLILVASEVIGNE 310 EG+Y C I +G + ++EV+ NE Sbjct: 952 EGLYKCTIKNDLGTVSTSAEVLVNE 976 >SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1) Length = 125 Score = 27.5 bits (58), Expect = 7.1 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +1 Query: 109 GYWYTEANPLKLTQNGKMDFKIDFSYFDRTYTVDIASPSGEARMRDMPIATMAPGALSFY 288 GY + P+KL +NG +KI + V A + + I+TM AL Y Sbjct: 24 GYAFKPPEPVKLAKNGVESWKIWKQLWQHYCVVSNADSHSPQFKKSLLISTMGIEALQIY 83 >SB_48776| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 214 Score = 27.5 bits (58), Expect = 7.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 164 TSKLISRTSIVLTPSILHPHLERHE 238 TSK + R S+VLTP IL + + E Sbjct: 38 TSKCVRRPSLVLTPEILDEYYKNEE 62 >SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) Length = 401 Score = 27.5 bits (58), Expect = 7.1 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +1 Query: 109 GYWYTEANPLKLTQNGKMDFKIDFSYFDRTYTVDIASPSGEARMRDMPIATMAPGALSFY 288 GY + P+KL +NG +KI + V A + + I+TM AL Y Sbjct: 21 GYAFKPPEPVKLAKNGVESWKIWKQLWQHYCIVSNADSQSPQFKKSLLISTMGIEALQIY 80 >SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1112 Score = 27.5 bits (58), Expect = 7.1 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 358 IDGTRIH-TFSNRSYEYPLSRSWHVVMQDESTQRGNWHELAIL 483 I G+ +H +F N+S + + ++HVV QD NW + IL Sbjct: 131 IHGSVLHRSFPNKSSKSRHAYTFHVVEQDAVWSEKNWLQCCIL 173 >SB_6112| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 316 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -3 Query: 132 ISFSIPVTQVLIESVCVVGEVSVLRTHVLE*DGEFHMIRRMSH 4 I ++IP+T I V V +R HV G FH+ RR H Sbjct: 176 IMYAIPIT---IIGVSYAKIVRYMRKHVRNVQGMFHVTRREDH 215 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,573,033 Number of Sequences: 59808 Number of extensions: 364794 Number of successful extensions: 1079 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 931 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1079 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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