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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              30   1.0  
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   29   3.1  
SB_59011| Best HMM Match : DUF1279 (HMM E-Value=0.51)                  28   4.1  
SB_51795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_9899| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   27   7.1  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1)                    27   7.1  
SB_48776| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)                27   7.1  
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_6112| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 458

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +3

Query: 192 SYLHRRYCIPIWRGTNEGHANCNNGTWCFVFLPTAKSL*TRC---QLLHWPPISTLLFYR 362
           +Y  +R C P+ + TN     C   TWC  +        TRC   +    PP++   +YR
Sbjct: 57  NYYRKRRCPPLTKCTNYRKRRCPPLTWCTNYRKRRCPPLTRCTNYRKRRCPPLNKCTYYR 116


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 159 NGLQN*FLVLRSYLHRRYCIPIWRGTNEGHANCNNGTWCFVFLPTAKSL*TRCQ 320
           +G Q+ F   +S   R +    WRGT  G  +  + + CF  +PT K   + C+
Sbjct: 599 HGRQSTFFENKSLTARAFENKGWRGTGRGRTSEVSNSSCFDRVPTTKERESVCE 652


>SB_59011| Best HMM Match : DUF1279 (HMM E-Value=0.51)
          Length = 235

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 414 SILARSHAGRVYSTRQLARVGYLVQEATER 503
           S  +R HA    +TR++A V  ++QE TER
Sbjct: 44  STSSRMHAAHSMATRRVAEVDAVIQENTER 73


>SB_51795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 88  YRLYEYLGYWYTEANPLKLT 147
           YR++E+LGYW  E   +++T
Sbjct: 32  YRMFEFLGYWMFELLRIRVT 51


>SB_9899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 109 GYWYTEANPLKLTQNGKMDFKIDFSYFDRTYTVDIASPSGEARMRDMPIATMAPGALSFY 288
           GY +    P+KL +NG   +KI    +     V  A        + + I+TM   AL  Y
Sbjct: 24  GYAFKPPEPVKLAKNGVESWKIWKQLYQHYCIVSNADSHSPQFKKSLLISTMGIEALQIY 83


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 202 TVDIASPSGEARMRDMPIATMAPGALSFYQP 294
           TV I  P G A   D  +AT+   +LS Y P
Sbjct: 532 TVQIRKPDGAALDADQKVATLITASLSRYPP 562


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 384  EGMYPCAIDRTVGLILVASEVIGNE 310
            EG+Y C I   +G +  ++EV+ NE
Sbjct: 952  EGLYKCTIKNDLGTVSTSAEVLVNE 976


>SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1)
          Length = 125

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 109 GYWYTEANPLKLTQNGKMDFKIDFSYFDRTYTVDIASPSGEARMRDMPIATMAPGALSFY 288
           GY +    P+KL +NG   +KI    +     V  A        + + I+TM   AL  Y
Sbjct: 24  GYAFKPPEPVKLAKNGVESWKIWKQLWQHYCVVSNADSHSPQFKKSLLISTMGIEALQIY 83


>SB_48776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 164 TSKLISRTSIVLTPSILHPHLERHE 238
           TSK + R S+VLTP IL  + +  E
Sbjct: 38  TSKCVRRPSLVLTPEILDEYYKNEE 62


>SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
          Length = 401

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 109 GYWYTEANPLKLTQNGKMDFKIDFSYFDRTYTVDIASPSGEARMRDMPIATMAPGALSFY 288
           GY +    P+KL +NG   +KI    +     V  A        + + I+TM   AL  Y
Sbjct: 21  GYAFKPPEPVKLAKNGVESWKIWKQLWQHYCIVSNADSQSPQFKKSLLISTMGIEALQIY 80


>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 358 IDGTRIH-TFSNRSYEYPLSRSWHVVMQDESTQRGNWHELAIL 483
           I G+ +H +F N+S +   + ++HVV QD      NW +  IL
Sbjct: 131 IHGSVLHRSFPNKSSKSRHAYTFHVVEQDAVWSEKNWLQCCIL 173


>SB_6112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 132 ISFSIPVTQVLIESVCVVGEVSVLRTHVLE*DGEFHMIRRMSH 4
           I ++IP+T   I  V     V  +R HV    G FH+ RR  H
Sbjct: 176 IMYAIPIT---IIGVSYAKIVRYMRKHVRNVQGMFHVTRREDH 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,573,033
Number of Sequences: 59808
Number of extensions: 364794
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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