Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 31 0.38
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 31 0.38
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 31 0.38
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ... 31 0.38
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 31 0.50
AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical ... 31 0.50
AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical ... 31 0.50
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 30 0.87
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.7
AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical ... 28 4.7
AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical ... 28 4.7
U67957-1|AAB07587.2| 324|Caenorhabditis elegans Hypothetical pr... 27 6.2
U00047-5|AAA50691.1| 399|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC006664-2|AAF39903.1| 346|Caenorhabditis elegans Hypothetical ... 27 6.2
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 31.5 bits (68), Expect = 0.38
Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
Frame = +1
Query: 88 YRLYEYLGYWYTEANPLKLTQNGKMDFKIDFSYFDRTYT-VDIASPSGEARMRDMPIATM 264
+ L + YW + P + +N ++ ++ R Y + + SP ++++ + +
Sbjct: 1230 FDLVKTYNYWTVSSRP-ENNENDRVVVQLTVEPMSRQYVNITMQSPMERIELKNVQVPRV 1288
Query: 265 APGALSFYQPLKAYELVANYFTGHQYQPYCSIDGTRIHTFSNRSYEYPLSRSWHVVMQDE 444
Y P A V + T C + +I TF + Y PL+ + ++ +D
Sbjct: 1289 -------YLPSIAQRSVKHQLT-EASGSVCKVQKNQIRTFDDVLYNTPLTTCYSLIAKDC 1340
Query: 445 STQRGNWHELAILSRRQQRDQQEI 516
S + A+LS++ +++ +E+
Sbjct: 1341 SEE----PTFAVLSKKTEKNSEEM 1360
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 31.5 bits (68), Expect = 0.38
Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
Frame = +1
Query: 88 YRLYEYLGYWYTEANPLKLTQNGKMDFKIDFSYFDRTYT-VDIASPSGEARMRDMPIATM 264
+ L + YW + P + +N ++ ++ R Y + + SP ++++ + +
Sbjct: 1230 FDLVKTYNYWTVSSRP-ENNENDRVVVQLTVEPMSRQYVNITMQSPMERIELKNVQVPRV 1288
Query: 265 APGALSFYQPLKAYELVANYFTGHQYQPYCSIDGTRIHTFSNRSYEYPLSRSWHVVMQDE 444
Y P A V + T C + +I TF + Y PL+ + ++ +D
Sbjct: 1289 -------YLPSIAQRSVKHQLT-EASGSVCKVQKNQIRTFDDVLYNTPLTTCYSLIAKDC 1340
Query: 445 STQRGNWHELAILSRRQQRDQQEI 516
S + A+LS++ +++ +E+
Sbjct: 1341 SEE----PTFAVLSKKTEKNSEEM 1360
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 31.5 bits (68), Expect = 0.38
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 352 CSIDGTRIHTFSNRSYEYPLSRSWHVVMQDESTQRGNWHELAILSRRQQRDQQEI 516
C +D + + TF N Y PL+ + +V +D S Q A+L+++ ++ +E+
Sbjct: 1308 CKVDQSEVSTFDNVIYRAPLTTCYSLVAKDCSEQ----PRFAVLAKKINKNSEEL 1358
>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 4 protein.
Length = 1603
Score = 31.5 bits (68), Expect = 0.38
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 352 CSIDGTRIHTFSNRSYEYPLSRSWHVVMQDESTQRGNWHELAILSRRQQRDQQEI 516
C +D + + TF N Y PL+ + +V +D S Q A+L+++ ++ +E+
Sbjct: 1308 CKVDQSEVSTFDNVIYRAPLTTCYSLVAKDCSEQ----PRFAVLAKKINKNSEEL 1358
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 352 CSIDGTRIHTFSNRSYEYPLSRSWHVVMQDESTQRGNWHELAILSRRQQRDQQEI 516
C +D + + TF N Y PL+ + +V +D S Q A+L+++ ++ +E+
Sbjct: 1308 CKVDQSEVSTFHNVIYRAPLTTCYSLVAKDCSEQ----PRFAVLAKKINKNSEEL 1358
>AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical
protein F22F7.1b protein.
Length = 392
Score = 31.1 bits (67), Expect = 0.50
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 1 VMAHAPDHVEFSVSFQDMSPQYRNFSYHTYRLYEYLGYWYTEANPLKLTQNGKMDFKI 174
++ PD F + F++ P R + ++ +Y + GY Y E PL GK++ K+
Sbjct: 302 ILQQYPDQCSFYM-FKNSGPSARQMAEASF-VYWFFGYGYKETLPLDQQHEGKINRKV 357
>AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical
protein F22F7.1a protein.
Length = 426
Score = 31.1 bits (67), Expect = 0.50
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 1 VMAHAPDHVEFSVSFQDMSPQYRNFSYHTYRLYEYLGYWYTEANPLKLTQNGKMDFKI 174
++ PD F + F++ P R + ++ +Y + GY Y E PL GK++ K+
Sbjct: 302 ILQQYPDQCSFYM-FKNSGPSARQMAEASF-VYWFFGYGYKETLPLDQQHEGKINRKV 357
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 30.3 bits (65), Expect = 0.87
Identities = 26/144 (18%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Frame = +1
Query: 88 YRLYEYLGYWYTEANPLKLTQNGKMDFKIDFSYFDRTYT-VDIASPSGEARMRDMPIATM 264
+ L + YW + P + +N ++ ++ R Y + + SP ++++ + +
Sbjct: 1232 FDLVKAYNYWTVSSRP-ENNENDRVVVQLTVEPMSRQYVNITMQSPIERVELKNVQVPRV 1290
Query: 265 APGALSFYQPLKAYELVANYFTGHQYQPYCSIDGTRIHTFSNRSYEYPLSRSWHVVMQDE 444
Y P A V + C + +I TF + Y PL+ + ++ +D
Sbjct: 1291 -------YLPSIAQRSV-KHLLNEASGSVCKVQKNQIRTFDDVLYNTPLTTCYSLIAKDC 1342
Query: 445 STQRGNWHELAILSRRQQRDQQEI 516
S + A+LS++ +++ +E+
Sbjct: 1343 SEE----PTFAVLSKKTEKNSEEM 1362
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 352 CSIDGTRIHTFSNRSYEYPLSRSWHVVMQDESTQRGNWHELAILSRRQQRDQQEI 516
C + + + TF N Y PL+ + +V +D S Q A+L+++ ++ +E+
Sbjct: 1308 CKVGQSEVSTFDNVIYRAPLTTCYSLVAKDCSEQ----PRFAVLAKKINKNSEEL 1358
>AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical
protein T15B7.8 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 299 KLMNSLPITSLATNINPTVLSMAQGYIPSVIAATNIPYLDPG 424
KL +S+P++ + +P + + + IP+V A T+ P L PG
Sbjct: 64 KLNSSIPVSEINAENDP--IKITRTVIPTVSAKTSYPTLVPG 103
>AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical
protein C17A2.5 protein.
Length = 731
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 49 DMSPQYRNFSYHTYRLYEYLGYWY 120
D P + NF+ +YR+++ +GY Y
Sbjct: 682 DYKPVFYNFTSQSYRMFDEMGYSY 705
>U67957-1|AAB07587.2| 324|Caenorhabditis elegans Hypothetical
protein K02H8.1 protein.
Length = 324
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 317 PITSLATNINPTVLSMAQGYIPSV 388
P+ A NP +L QGY+P+V
Sbjct: 291 PVAQQAQQFNPYLLQTLQGYVPAV 314
>U00047-5|AAA50691.1| 399|Caenorhabditis elegans Hypothetical
protein ZK418.7 protein.
Length = 399
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -2
Query: 310 VHKLLAVGRKTKHQVPLLQLACPSFVPLQMGMQYRRCKYDRST 182
VH L GR + VPL+ L C S +Y C + T
Sbjct: 18 VHFLFGDGRMSGQSVPLIFLNCSSIFIFGKDEKYAECPIENGT 60
>AC006664-2|AAF39903.1| 346|Caenorhabditis elegans Hypothetical
protein H24O09.2 protein.
Length = 346
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 285 LPTAKSL*TRCQLLHWPPISTLLFYRWHKDTYLQ*SQLRISPISI 419
LPT K+L RC L HWP + L F + K T L S +SI
Sbjct: 6 LPT-KAL--RCTLQHWPLLEILTFSLFSKKTKNLSKSLHRSALSI 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,665
Number of Sequences: 27780
Number of extensions: 276564
Number of successful extensions: 781
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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