Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 87 1e-18
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 1e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 43 3e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 7e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 2e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 39 5e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 38 7e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 7e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 7e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.003
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.005
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.005
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.008
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.011
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 34 0.015
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 33 0.034
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.10
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.32
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.32
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.42
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 29 0.42
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.42
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.97
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 1.3
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.2
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 2.2
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.0
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 3.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 5.2
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 6.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 9.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.0
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 9.0
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 87.4 bits (207), Expect = 1e-18
Identities = 35/58 (60%), Positives = 49/58 (84%)
Frame = +2
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
P +SVEG+I+ V+ VH EA EE +++ F++FG +KN+HLNLDRRTG++KGYAL+EY T
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYAT 60
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+++ N+ + E+DI FSEFGE +I+L D+ TG KG+A ++YE
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L V+N+ ++ +EE++++ F FG I+ ++L D+ TG KG+A V Y
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.7 bits (96), Expect = 3e-05
Identities = 14/47 (29%), Positives = 32/47 (68%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ N+ E+D+++ F FG+++ +H+ +D++T KG+A +++
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.5 bits (93), Expect = 7e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
ILFV N+ +++ E +Q F G++ ++ + D+ +G KGYA VE+
Sbjct: 93 ILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 332 SGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
+G G Q S +FV N+ A E+D+ F G+I++I L D ++G LKG+ V
Sbjct: 354 AGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Query: 512 Y 514
+
Sbjct: 414 F 414
Score = 35.5 bits (78), Expect = 0.005
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 338 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
T Q S E +FV + ++ + +F E+G I + +D ++G KGY V++E
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Query: 518 T 520
T
Sbjct: 313 T 313
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FV V + EE+ +N F++FG + + L +D+ TG +G+ V YE
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 38.7 bits (86), Expect = 5e-04
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+L+V + E+ ++ FS+FG + + ++ +R+TG K YA +E+E+
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFES 155
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 38.3 bits (85), Expect = 7e-04
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
ILFV N+ E + D++ F + G+I+ + L TG KG+ V++
Sbjct: 229 ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+LFV ++ Q+ED++ FS FG+I + + D+ TG YA +E++
Sbjct: 245 VLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFD 293
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 7e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+F+S + + +E DI+ +F+ +G I+ I + ++ TG GYA V +E
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+++V N+ E EE + + F + G +K+ L +D +G KGY EY
Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L VSN+H +ED++ F FG+I+ +HL D + KG+ ++Y
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQY 387
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 362 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+G LF+ N+ +E +E ++ +FS FG I + + D + G KG+ V Y T
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTT 413
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FV N+ EA+EE + F + G I + + D +T KG+A ++++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFVS + QE+++Q FS+FG + ++ + + T +G+ + + T
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.008
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV N+ + +++D+ N FS+ G IK+ + + TG +GY V +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 31.9 bits (69), Expect = 0.060
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Frame = +2
Query: 140 MADVLDIENSEEFEVDEDGE---QGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYD 310
+ D E ++EF DE + + E + G G E G S E N D
Sbjct: 194 LKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGESEEEGSN---VD 250
Query: 311 SLAPEGDSGTPGPQ-----RSVEGW--ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 469
+ GDS + R EG +FV N+ E E+++ N F +FG + L
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 470 DRRTGFLKGYALVEY 514
D T G +++
Sbjct: 311 DPATDRSLGRGFIKF 325
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.3 bits (75), Expect = 0.011
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
++V N+ EE I FS+ GEI+ I + +DR T G+ VEY
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 323 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
E D P V LF+ + +E +++ F FG ++++ LN + R GFLK
Sbjct: 391 ERDPTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 32.7 bits (71), Expect = 0.034
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FVSN+ E ++ F FGE+ ++ L L+ TG G + ++
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.1 bits (67), Expect = 0.10
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 338 TPGPQRSVEGWILFVSNVHEE--AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
TP +++ LFV N+ + + ++ FS+FG IK+ L T KGY V
Sbjct: 409 TPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVS 468
Query: 512 Y 514
+
Sbjct: 469 F 469
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.5 bits (63), Expect = 0.32
Identities = 29/96 (30%), Positives = 42/96 (43%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 340
EN + EDGE G A LK + F ++ +A ER + R S P
Sbjct: 11 ENVRKVNYYEDGESG-AILKTCCIE-----FESQDAARNALERQSTQRLISGNPISLDVV 64
Query: 341 PGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
P Q+ ++LF+SN+ E E DI+ F + I
Sbjct: 65 PEWQKP-SYYMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 337 TAIAFRS*TVVSSAVTPFCSTASTGFIAKTTTFSLTCLLLKSSDS 203
T+++ T+ +S T +T T F TTT T L+ +SDS
Sbjct: 380 TSVSDEPTTITASGATSVTTTTKTDFDTVTTTIVSTSTLISASDS 424
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+ V N+ +E I F +G I +I + + +++ KGY +EY
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 502 SVAFEEAGAPVQIQMNILYFTKLGKLILYIFFLCFFMYITDKQNP 368
S AF + P + + +L+F+ L + ++IF+ FF T +Q P
Sbjct: 396 SNAFSKVSLPNSLILRVLFFSLLFIIGIHIFYFLFFHVATIQQWP 440
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
+FV + E+D+Q F FG I NI + + GF++
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQ 338
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
LFV N+ + +E + FSE+ + + DR G +G+ V ++
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFK 78
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 380 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
V N+H + E+D+ + F F I+ I +N D R G +G V +ET
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYD-RAGRSEGSCDVYFET 133
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV N+ E + + FS G++ G KGY V Y++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 311 SLAPEG--DSGTPGPQ-RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 481
S+ P G + P PQ +FV + + EE+++ F FGEI + + +
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGC 340
Query: 482 GFLK 493
GF++
Sbjct: 341 GFVQ 344
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L++ + E IQ ++ G+ + L +R TG GY VE+
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 156 ISKIQKNLKSTKMVNRESLDLRRRHVSEKVVVLAMKPVEAVLQNGV 293
+S++ K +S + L ++R VS + L PV+ +L+NG+
Sbjct: 30 VSELNKQKRSPGQTVSKRLHKKQRVVSNPDLSLPSSPVKQILRNGL 75
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 272 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFG 442
G + NR L+ + D +P PQ+ G+ VSN+ +E ++ + + S FG
Sbjct: 4 GGSGSITNRSTLKPLSVD-DLRSPSPQKEYRGFRTSVSNIPQE--KKFVPSHLSHFG 57
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 389 VHEEAQEEDIQNQFSEFGE 445
+ EE +E+DI+N+ S F E
Sbjct: 72 IEEEEEEDDIENEASSFSE 90
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 347 PQRSVEGWILFVSNVHEEAQ--EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
P ++ L+V N+ + + +++ FS FG I + L +G KGY V +
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 137 NMADVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEA 265
N D L ++ ++ +DE+ + + K+K +K K + G+EA
Sbjct: 124 NAFDAL-ADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEA 165
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 155 DIENSEEFEVDEDGEQGIARLKEKA-RKRKGRGFGNEAGGGSA 280
+I SE+ D++ E +LK+K RK K GN+A G A
Sbjct: 357 EINPSEQEFSDDEAEVAAKQLKKKRKRKAKSMVSGNQALPGEA 399
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/39 (23%), Positives = 24/39 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
++ S++ + E+++ ++GEI++I +R +GF+
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFV 540
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 215 LKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 352
+ + R+ + E GGGSA GN G +SG PQ
Sbjct: 358 MADSTADREYQSLMQELGGGSAISNGN-GEPQKSIEFSESGAASPQ 402
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 206 IARLKEKARKRKGRGFG 256
I R+K + +R+GRGFG
Sbjct: 245 IRRIKLRGEQRRGRGFG 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,110
Number of Sequences: 5004
Number of extensions: 32751
Number of successful extensions: 153
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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