Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 1e-31
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 45 3e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 6e-05
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 41 5e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 40 0.002
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.003
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 38 0.004
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 38 0.007
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 37 0.009
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 36 0.027
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 35 0.047
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09) 35 0.047
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.082
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 34 0.082
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.11
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.14
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 33 0.19
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 33 0.19
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 32 0.25
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 32 0.33
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 31 0.44
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 31 0.44
SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3) 31 0.58
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 31 0.58
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 31 0.58
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 0.76
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 1.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 30 1.0
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5) 30 1.3
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 30 1.3
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 1.8
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 2.3
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 29 2.3
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 29 3.1
SB_22116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 29 3.1
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 29 3.1
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35) 29 3.1
SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 28 4.1
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 28 5.4
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 28 5.4
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_28807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_57148| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 28 5.4
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 27 7.1
SB_33160| Best HMM Match : Collagen (HMM E-Value=0.00022) 27 7.1
SB_22992| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 27 7.1
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_6645| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3) 27 9.4
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 27 9.4
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 27 9.4
SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3) 27 9.4
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 133 bits (321), Expect = 1e-31
Identities = 70/130 (53%), Positives = 93/130 (71%), Gaps = 5/130 (3%)
Frame = +2
Query: 146 DVLDIENSEEFE-VDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAP 322
DVLD+E+ + E +D++GE + R+K +K+KGRGF G ++ R + YDS+
Sbjct: 222 DVLDLEDDKPSEFLDDEGEDDVQRVKS-GKKKKGRGFS----GDKSSSRPDA--YDSIEG 274
Query: 323 EGDSGTPGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
G+ G GP R VEGWILFV+N+HEEAQE+DI FS++GEIKN+H+NLDRRTGF+
Sbjct: 275 -GEGGESGPARCEWHPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFI 333
Query: 491 KGYALVEYET 520
KGYALVEYET
Sbjct: 334 KGYALVEYET 343
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FV N+ EA EE ++ FSE G + + L DR TG KGY EY+
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYK 74
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +2
Query: 356 SVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
S++ LFVSN+ +A+E +I+ FS+ G +K + L + R G KGY VEYE
Sbjct: 167 SLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRL-VTNRAGKPKGYGYVEYE 219
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+++++VH + E+DI++ F FG++ + L+ + TG KGY +EYE
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYE 248
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
++V +++ E +EE I+ F FG I I L+ D KG+A VEY+
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
LFV N+ E+ +E D+ F +G++ +H+ DR TG KG +V+
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVK 366
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +2
Query: 266 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGE 445
G S++ +R R S S TP P + L+V+++ ++ +Q FS +G
Sbjct: 1129 GKRSSSSSSSRSRSRSPRRRKRSPTPKPTK------LYVAHLTRNVNKDHVQEIFSVYGR 1182
Query: 446 IKNIHLNLDRRTGFLKGYALVEY 514
+K + L DR +G+A VEY
Sbjct: 1183 VKTVDLPTDRTNNLSRGFAYVEY 1205
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
LFV + E +E ++ FS++GE+ + + +D TG +G+A V+++
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFK 78
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 308 DSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGF 487
D+ + S P EG +F+ N+ ++ +++I N F +FG+I + +D T
Sbjct: 396 DASEDDNHSQRSKPSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQH 455
Query: 488 LKGYALVEYET 520
KG A V+Y +
Sbjct: 456 SKGSAFVKYRS 466
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/49 (30%), Positives = 31/49 (63%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+F+ N+ + +EE ++ F+ G ++++ L DR+TG KG+ V +E+
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFES 106
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+F+ + E+ ++ S FGE++ +L D TG KGYA EY
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEY 721
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +2
Query: 224 KARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWI-LFVSNVHEE 400
K R R F E G S +RG Y+ G S +R G LFV N+ +
Sbjct: 7 KPRSRNSDSFSKERGD-SRGDRGGGRNYNRNNGAGYSSMK--ERKFTGRCRLFVGNLID- 62
Query: 401 AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
EE+++ F ++GE+ + +N ++ GF++
Sbjct: 63 CDEEEMKEMFKKYGEVAEVFINKEKGFGFIR 93
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L V N+ E ++ FS+FG+++ + D R G KG+ +VE+
Sbjct: 128 LRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVR-GRSKGHGIVEF 173
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 362 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
+GW +FV + +EA + FS +G I NI L LD+ GF+
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFV 312
Score = 34.3 bits (75), Expect = 0.062
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
L ++ V +EDI+ F G + + L DR TG GYA V Y+
Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYD 76
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 380 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
V+N+ EE +E D+Q F G I I L D+ T KG+A + +
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 229
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+LFV ++ +ED++ FS FG I + + D++TG YA +E+E
Sbjct: 121 VLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFE 169
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +2
Query: 338 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+P P S +LFV N+ E E + S +G I+ + L TG KGY VEY
Sbjct: 107 SPAPPES----LLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYA 162
Query: 518 T 520
T
Sbjct: 163 T 163
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 326 GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 505
G+ G P G +F+ + + E+++ + GEI+ L +D TG KG+A
Sbjct: 139 GERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAF 198
Query: 506 VEY 514
+
Sbjct: 199 CTF 201
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +2
Query: 344 GPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G + + ++++ ++ E +I+ F +FG + I L+ +++ KGYA VE+
Sbjct: 90 GDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF 146
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+ +V + EE E+ + F FG+I ++ + +D T +G+ VE+E
Sbjct: 6 VAYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFE 54
>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
Length = 234
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
E G+QG + + K +G G GGG E+G RG + P G G G
Sbjct: 2 ETGDQGATGITGEVGKEGEQGVKGARGGGGVKGEKGYRGELGKVGPSGPQGRKG 55
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 179 EVDEDGEQGIARLKEKARKRKGRGFGNEAGG-GSAAERGNRGRYDSLAPEGDSGTPGPQR 355
EV ++GEQG+ + + +G+ E G G + +G +G P G G GPQ
Sbjct: 14 EVGKEGEQGVKGARGGGGVKGEKGYRGELGKVGPSGPQGRKGFKGEPGPPGLPGEQGPQG 73
Query: 356 SVEG 367
G
Sbjct: 74 KFGG 77
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.9 bits (74), Expect = 0.082
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
++V + E+ E I F + G + N+H+ DR T +GY VE+
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEF 61
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 33.9 bits (74), Expect = 0.082
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + E E +++ F E+G +K + D+ G KGYA + +E+
Sbjct: 10 IFVKGFNRETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFES 57
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV + E+ ++ ++ F++FGEI+ + DR T KGY V T
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMAT 60
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +2
Query: 395 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
++ +ED++++F FG+I+ + + D +T KGY V++
Sbjct: 62 KDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKF 101
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/113 (20%), Positives = 46/113 (40%)
Frame = +2
Query: 182 VDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 361
VD E +++ +K + G ++ R + R DSL G+ +
Sbjct: 45 VDTPTEASGDKMRNGQEDKKAYSVTSSQSPGLSSGRSSSDRMDSLPDTGEE-------KL 97
Query: 362 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
L++ + ++D+ ++G I + LD+ T KGY V++E+
Sbjct: 98 SKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFES 150
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L V N+ ED++ F ++G++ +I++ DR T +G+A V +
Sbjct: 18 LKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRF 64
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQG---IARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
+N +E +++ED E+ +A+ + + +GRG G G GS+ RG RGR
Sbjct: 326 DNDDEDDIEEDDEEEWSPVAKSPSRRGRGRGRGRGRGRGRGSSRGRG-RGR 375
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Frame = +2
Query: 146 DVLDIENSEEFEVDEDGEQGIAR---------LKEKARKRKGRGFGNEAGGGSAAERGNR 298
D +D E EEF D D E I K +R+ +GRG G G G + RG R
Sbjct: 313 DDVDRELLEEFMFDNDDEDDIEEDDEEEWSPVAKSPSRRGRGRGRGRGRGRGRGSSRG-R 371
Query: 299 GR 304
GR
Sbjct: 372 GR 373
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 401 AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
A + ++ FSEFG++ + L + G +KG+A +E+E+
Sbjct: 99 ADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFES 138
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 218 KEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEG 328
K+K R +KGR FG G G +R N R D AP+G
Sbjct: 293 KQKRRHKKGRDFGR--GRGRGGKRRNFERSDQSAPKG 327
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
G + G+ +RG RG S P+G++G PGP
Sbjct: 117 GAQGRPGAPGDRGERGSAGSDGPKGEAGGPGP 148
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
G+ G+ E+G +G+ P G++G PG
Sbjct: 254 GDRGEQGARGEKGEQGKTGERGPVGEAGRPG 284
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRG 301
E G + ++ R+R G G G GGG RG RG
Sbjct: 986 EPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGRG 1023
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 245 RGFGNEAGG-GSAAERGNRGRYDSLAPEGDSGTPG 346
RG AG GS E+GNRGR P G G PG
Sbjct: 22 RGPPGPAGPPGSKGEKGNRGRRGRRGPRGPPGKPG 56
>SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3)
Length = 213
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 164 NSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 340
N E+ EV ED E+ ++EKA+KR R FG +++ G SL D T
Sbjct: 105 NEEDAEVKEDFEESPKEVEEKAKKR--RSFGMFKKKDKESDKDKAGSETSLNAADDEET 161
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 203 GIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
G + ++ R+R G G G GGG RG RGR
Sbjct: 502 GSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGRGR 535
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKGRGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGP 349
+DGE+G LK + G+G G G RG +G+ + P G G PGP
Sbjct: 198 KDGEKG---LKGETGPIGGQGLEGRTGVQGDDGIRGPQGKQGGVGPTGGHGPPGP 249
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 242 GRGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVH 394
G G E G G ERG +G + S+ G G PG + L N H
Sbjct: 300 GYGLMGEKGTAGRLGERGKKGPFGSIGDMGPPGEPGKPGEILNLHLLKQNTH 351
>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 170 EEFEVDEDGEQGIARLKEKARKRKGRGFGNE-AGGGSAAERGNRGRYDSLAPEGDSG-TP 343
EEF ED +G ++E ++ RG+ ++ A AE N G ++ + +SG TP
Sbjct: 384 EEFSDSEDEGEGRRDVRENRPHKRPRGYASDKAVTNGNAENANGGSDEAKSTSSNSGNTP 443
Query: 344 GPQ 352
P+
Sbjct: 444 APK 446
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKRKG 244
E +E + DEDGE G + K+K +K+KG
Sbjct: 387 EEGKEGDEDEDGEGGDKKKKKKKKKKKG 414
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 146 DVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPE 325
D +D + + F + + EQ + R G G GS +RG G + P+
Sbjct: 999 DTVDQQMLDHFMISQILEQNLTLFYGGLMGRSGP-VGPPGPPGSPGDRGQTGVPGPVGPD 1057
Query: 326 GDSGTPG 346
GD G PG
Sbjct: 1058 GDIGAPG 1064
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 407 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA 502
E +++ FS FG + ++ + DRRTG KG A
Sbjct: 1079 ELELETFFSNFGPVADVRIVCDRRTGLNKGDA 1110
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 245 RGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGP 349
RG AG G+A E G RG P+G GT GP
Sbjct: 416 RGMPGVAGKNGNAGEPGERGPVGPQGPQGAPGTQGP 451
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKGR--GFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
E G QG R K R+G G G+ RG RGR +G G PG
Sbjct: 511 EPGAQGTKR-KPGTPGRQGMPGASGRRGAPGAKGSRGERGRVGPPGIDGKDGAPG 564
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 230 RKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
R KG G G+ G RG + P GD G PGP
Sbjct: 872 RGEKGEQ-GPPGVAGTDGPPGPRGNVGPMGPMGDPGLPGP 910
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 227 ARKRKG-RGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 352
A+ KG RGF GN G G +G RG + G G+ GP+
Sbjct: 3684 AKGDKGERGFPGNNGGKGERGAQGPRGEKGNTGAPGSQGSTGPR 3727
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +2
Query: 155 DIENSEEFEVDEDGEQ--GIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEG 328
D ++E+ DG + G E R GRG G GGG G GR
Sbjct: 309 DPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGRGGGGGGGGGGGGGGGGGGRGGGGGFSS 368
Query: 329 DSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
P P+RS + + VS + +D+++ E G++
Sbjct: 369 RGRGPPPRRS--DFRVQVSGLPPTGSWQDLKDHMREAGDV 406
>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
Length = 565
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +2
Query: 143 ADVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAP 322
A VLD+E + FE E+GE G A GRG G GGG RG G+ + +P
Sbjct: 347 AQVLDVE-MQSFE--EEGEGGRAG-------GSGRGEGEGQGGGGGEVRGAEGKEEENSP 396
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL--DRRTGFLKGYALVEY 514
LF+ + +E EED++ + + + + DR T KGY V +
Sbjct: 106 LFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKFKGYCFVNF 154
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 437 FGEIKNIHLNLDRRTGFLKGYALVEYE 517
+GEI N++L D++TG KG+ + YE
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYE 28
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 437 FGEIKNIHLNLDRRTGFLKGYALVEYE 517
+GEI N++L D++TG KG+ + YE
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYE 28
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNI 457
LFV + + A+EED++ FS FG I+ +
Sbjct: 216 LFVGMISKHAKEEDLRVMFSPFGTIEEL 243
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 248 GFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
GF G G++G + P GD G PGP
Sbjct: 626 GFPGPPGDSDYGPPGDKGLKGNTGPPGDEGVPGP 659
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
GE GIA L KG G G A E+G+ G +GD G PGP
Sbjct: 1385 GESGIAGLDGP----KGEP-GLPGRDGPAGEKGSPGLSGLRGDKGDRGLPGP 1431
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
G + G A G G + PEG++G PGP
Sbjct: 805 GPQGPEGEAGANGVSGPKGEMGPEGEAGQPGP 836
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV ++ E E ++ F +GE+ ++ + D T +G+ V +
Sbjct: 16 LFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTF 62
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 179 EVDEDGEQGIARLKEKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQR 355
E+ DG G+A + + + G G+ G A RG +G P G G GP
Sbjct: 319 EMGPDGPAGLAGSQGEQGPQGPVGMKGDNGPQGGAGSRGTKGEAGPPGPNGPKGNVGPAG 378
Query: 356 SV 361
V
Sbjct: 379 QV 380
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKG---RGFGNEAGG-GSAAERGNRGRYDSLAPEGDSGTPG 346
E G QG +K + G RG EAG G +GN G + G GTPG
Sbjct: 334 EQGPQGPVGMKGDNGPQGGAGSRGTKGEAGPPGPNGPKGNVGPAGQVGNNGQDGTPG 390
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G G+A G RG+ ++ GD+G GPQ
Sbjct: 169 GRNGANGTAGPPGVRGQPGAIGSPGDAGRAGPQ 201
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
GEQG K+ + G G G + G E+G G + P G++G+PG
Sbjct: 442 GEQG----KQGEKGHAGEG-GADGAPGIPGEQGPMGPVGAPGPVGNAGSPG 487
>SB_22116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
G G E+G+RG P G+ G PGP
Sbjct: 4 GRAGDAGKPGEKGSRGPPGPAGPIGNPGKPGP 35
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G +G ++ KA +G+ E G G E G G+ G G PGP+
Sbjct: 23 GRRGPRGMRGKAGMSGPKGYSGEKGMQGDRGENGLPGKLGHQGKRGRRGKPGPE 76
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAGG-GSAAERGNRGRYDSLAPEGDSGTPGP 349
G++G L K + RG + G G A +G GR +G+ G PGP
Sbjct: 50 GDRGENGLPGKLGHQGKRGRRGKPGPEGPAGVQGMEGRQGVQGKDGEEGPPGP 102
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAGG---GSAAERGNRGRYDSLAPEGDSGTPG 346
G QG R + R KG G GNE G A +G RG + P G G PG
Sbjct: 128 GVQG-ERGSQGGRGIKG-GRGNEGSAGIPGRAGNKGGRGDRGPVGPVGVIGNPG 179
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAG 268
GEQGI RLKE + + K F N +G
Sbjct: 29 GEQGIKRLKEDSGRDKQSSFKNSSG 53
>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
Length = 337
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAG 268
GEQGI RLKE + + K F N +G
Sbjct: 172 GEQGIKRLKEDSGRDKQSSFKNSSG 196
>SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKR---KGRGFGNEAGGGSAAERGNRGRYDSLAPEGD 331
E E E +E E+G EK + +G GNE G E GN + EG+
Sbjct: 112 EEGNEEENEEGNEEGNEEGNEKENEEGNEEGNEEGNEEGNEVGNEEGNEEENEERNEEGN 171
Query: 332 SG 337
G
Sbjct: 172 RG 173
Score = 27.1 bits (57), Expect = 9.4
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKR---KGRGFGNEAGGGSAAERGN-RGRYDSLAPEG 328
E+ E E +E E+G E+ + +G GNE G E GN G + E
Sbjct: 44 EDGNEEENEEGNEEGNEEGNEEENEEGNEEGNEEGNEEGNEEGNEEGNEEGNEEGNEEEN 103
Query: 329 DSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKN 454
+ G + + EG +EE EE + + E E N
Sbjct: 104 EEG--NEEENEEGNEEENEEGNEEGNEEGNEKENEEGNEEGN 143
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 176 FEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRY 307
+ D G+ G + K+R G G +E+G + + N+ Y
Sbjct: 449 YSPDNYGQYGAMLVSRKSRSENGNGLADESGCSDSLTKANKSIY 492
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 463
L+V + + E+D+++ F +FGE+++I +
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISM 335
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 191 DGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGD 331
DG G++ ++AR R GRG G G + RG R + PE D
Sbjct: 465 DGTGGLSNGNDRARGRGGRG-----GRGRGSGRGRRSTSSAPTPELD 506
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
E G +G + KR G G+ G G A ++G G S P+G +G GP
Sbjct: 80 EKGYRGAPGRQGLQGKRGPEGDPGSPGGSGEAGDKGVDGPPGSPGPQGFNGARGP 134
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 463
LFV + E E+ + F++FGE+ ++++
Sbjct: 201 LFVGRLPESTTEKTLMEYFAQFGEVTDVYI 230
>SB_28807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 197 EQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
E + ++KEK KRK F ++ GGG + D +GD G
Sbjct: 49 EHPVKKVKEKREKRKNFDFVDDNGGGDGDDDDGDDDNDDDDGDGDGDGDG 98
>SB_57148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 197 EQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
E + ++KEK KRK F ++ GGG + D +GD G
Sbjct: 256 EHPVKKVKEKREKRKNFDFVDDNGGGDGDDDDGDDDNDDDDGDGDGDGDG 305
>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 188 EDGEQGIARLKEKARKRKGRG-FGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP--QRS 358
E G QG + + + +G FG G+ E+G RG+ P G G GP R
Sbjct: 337 ESGAQGDSGDEGDGGAKGDKGVFGGVGLDGAEGEQGARGKSGDFGPIGPPGPLGPPGDRG 396
Query: 359 VEG 367
++G
Sbjct: 397 MQG 399
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNV-HEE 400
G + G+ +G +G P+G+ GTPG + G F SN H E
Sbjct: 383 GPQGPNGTRGLQGEKGPQGDQGPKGEPGTPG-AKGESGGPPFASNASHNE 431
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+ + N+ E I FS GEI ++++ + +T KG+ +V +
Sbjct: 123 VILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTF 169
>SB_33160| Best HMM Match : Collagen (HMM E-Value=0.00022)
Length = 94
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G GS +G++G + P+G +GT GP+
Sbjct: 41 GPRGYNGSQGPKGDQGVQGPIGPQGYNGTQGPK 73
>SB_22992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 260 EAGGGSAAERGNRGRYDSL 316
EA GGS AERG G+Y L
Sbjct: 54 EAVGGSGAERGGEGQYAEL 72
>SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 967
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G GS +G++G + P+G +GT GP+
Sbjct: 825 GPRGFNGSQGPKGDQGVQGPIGPQGYNGTQGPK 857
>SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -1
Query: 374 ESSLQLISEVLVYRYRLPELNCRIFRGYPVLQHCLHRLHCQNHDLFAY 231
E LQ IS +++Y Y LN R FR PV H L Q HD F +
Sbjct: 7 EIILQRISTLIIYNY----LN-RAFRQIPVDPADYHNLGFQIHDQFYF 49
>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
Length = 1714
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +2
Query: 203 GIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGW 370
G + L E ++ + EAG S G+ G Y S G GT G S W
Sbjct: 1099 GFSALAECDKEVQMTSSSREAGSFSNVAYGSNGAYGSNGAYGSDGTYGSDGSDSEW 1154
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 272 GSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G +G+ GR + P+GD G GPQ
Sbjct: 5 GVKGPQGDNGRDGPIGPKGDQGDIGPQ 31
>SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 272 GSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G+ RGN G P+GD+G GP+
Sbjct: 236 GTQGPRGNTGIMGPQGPKGDTGITGPK 262
>SB_6645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 146 DVLDIENSEEFEVDEDGE--QGIARLKEKARKRKGRGFGNEAGGG 274
D E E+ + D++GE +G K+K +K+K + E G G
Sbjct: 67 DAEKAEGDEQEKEDDEGEEVEGSTATKKKKKKKKKKAGNGEGGDG 111
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQR 355
G + G+ G+RG L P G G PG Q+
Sbjct: 57 GKQGAPGTIGFPGSRGDTGDLGPPGAKGLPGAQQ 90
>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
Length = 642
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 395 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
E+ EE+++ SE+ I N+ + L + GY L Y
Sbjct: 114 EDITEENLELWISEYEVINNVSIKLKTKKNPTSGYVLQNY 153
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
G+ G+ RG RGR + G GTPG
Sbjct: 138 GHPGQKGTRGRRGQRGRRGNPGSPGPKGTPG 168
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 272 GSAAERGNRGRYDSLAPEGDSGTPGPQ 352
G ++G RGR G+ G+PGP+
Sbjct: 138 GHPGQKGTRGRRGQRGRRGNPGSPGPK 164
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 302 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDI 418
R + P D+G G S G LFV + H + E+ I
Sbjct: 241 RTQGVTPSSDTGPQGDHTSGSGHYLFVESSHAKLGEQAI 279
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRG 301
+ + + G G+ R + R R GRG GGG RG RG
Sbjct: 377 QEERKLNTETFGVSGMRRGRGGYRGRGGRGGYRGRGGGRGYYRGGRG 423
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 254 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQR 355
G + G+ G+RG L P G G PG Q+
Sbjct: 57 GKQGAPGTIGFPGSRGDTGDLGPPGAKGLPGAQQ 90
>SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 395 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
E+ EE+++ SE+ I N+ + L + GY L Y
Sbjct: 33 EDITEENLELWISEYEVINNVSIKLKTKKNPTSGYVLQNY 72
>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 395 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
E+ EE+++ SE+ I N+ + L + GY L Y
Sbjct: 172 EDITEENLELWISEYEVINNVSIKLKTKKNPTSGYVLQNY 211
>SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)
Length = 204
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 395 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
E+ EE+++ SE+ I N+ + L + GY L Y
Sbjct: 24 EDITEENLELWISEYEVINNVSIKLKTKKNPTSGYVLQNY 63
>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 395 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
E+ EE+++ SE+ I N+ + L + GY L Y
Sbjct: 269 EDITEENLELWISEYEVINNVSIKLKTKKNPTSGYVLQNY 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,980
Number of Sequences: 59808
Number of extensions: 237220
Number of successful extensions: 1217
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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