Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.088
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 221 EKARKRKGRGFGNEAGGGSAAERGNRGR--YDSLAPEGD 331
           E+  + KGRG G    GGS    GNRGR  +++   +GD
Sbjct: 76  EETGRGKGRGHGK---GGSRGRGGNRGRTGFNNKNKDGD 111


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 WILFVSNVHEEAQEEDIQNQFSEFGEIK 451
           WIL + +VH  A    + ++FS FG  K
Sbjct: 569 WILVMVSVHVVALVLYLLDRFSPFGRFK 596


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 155 DIENSEEFEVDEDGEQGIARLKEKARKRKGRGFG--NEAGGGSAAERGNRGRY 307
           D+ + +      DGE+  +R + +  K+K R +   +        ER +R RY
Sbjct: 236 DLRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSRRRY 288


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +3

Query: 189 KMVNRESLDLRRRHVSEKVVVLAMKPVEAVLQNG 290
           +++ RES D+  ++     ++++MK +E + Q+G
Sbjct: 337 QVLQRESFDVVAQNEETLQMIVSMKIMENLPQSG 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,931
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)