Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   3.0  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.0  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   5.2  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   6.8  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   6.8  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   6.8  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   9.0  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   9.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   9.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   9.0  

>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 391 FG-YASVKTYIVDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEH 260
           FG YA ++  I  +   T      PA  FSGQS   LV   VKE+
Sbjct: 44  FGVYAIIQARINANNDETPLVYEEPAPPFSGQSNGKLVTTTVKEY 88


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 393 NYGNMPSVLDLCTNKYSQVHIILTGVCYMSARNSAGRLDLYY 518
           +Y N PSVLD  + +Y+Q+ I       + A N   RL   Y
Sbjct: 82  SYLNEPSVLDALSTRYNQLQIYTYSGIVLIAVNPFQRLPNLY 123


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 270 TTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNM-PSVLDLCTNKYSQ 446
           TT+TT+     PE +++ +     VS+  S+    T  YP +  +M  S L   +   S 
Sbjct: 572 TTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSS 631

Query: 447 VHIILTGVCYMSARNSAG 500
            H   +    MS   SAG
Sbjct: 632 AHSSSSRSSSMSLPPSAG 649


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  DTTESMDDEINIIKANIGEVVRNLNNKSTVSAYIL 197
           DTT++ D E+  +   I E+V    N S V A  L
Sbjct: 20  DTTDNFDAEMQDLNGYISEIVDEARNVSEVDAKFL 54


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
 Frame = +3

Query: 9    TRRKYFNILLLFIIMIAEITCKSFTVVIDT-TESMDDEINIIKANIGEVVRNLNNKSTVS 185
            +RR   N   LF  ++ +   +    +I     ++ DE + ++    E++R  N+     
Sbjct: 1585 SRRLACNSFQLFRSLLPDFDARMLLEIISRLVGTISDETSYLRDYSVEILRTFNS----- 1639

Query: 186  AYILVPFNDPDVGTALITRTADDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTI 365
             Y+LV  +D  +  + I  TA      +  LTT    +  E+      + LRV + +S  
Sbjct: 1640 -YVLVMNSDDLLSYSQILWTA------IACLTTIHEDEFIESVKIAYAYFLRVEETDSAT 1692

Query: 366  YVFTDAYPKNY 398
                + +P+N+
Sbjct: 1693 QQIMETFPQNW 1703


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 318 AGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQV 449
           A +   L+V   +S+ +VFT+A     G   ++LD  T K++ V
Sbjct: 64  AALYRVLQVLKLDSSYFVFTNAPKLLQGTFAAILDYGTYKFALV 107


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 21   YFNILLLFIIMIAEITCKSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTVSAY 191
            ++N L +F+  +  I    +  V+D T  +     +   +    VR+L N S VSA+
Sbjct: 1460 FYNFLTIFLDTLKSIVTNYYAYVLDDTIEL-----LSSKDTNSEVRHLVNSSLVSAF 1511


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 355 SQQYTSSRMHIRRITEICHQFWICALINIV 444
           S  Y   R     +T +  QF+IC+LIN++
Sbjct: 79  SYYYIKYRTPDSPVTHLGFQFFICSLINVL 108


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 173 FIV*ISHNFTNICFYNINLIVHRFRCIDNNCKTFARY 63
           F V +S   T   FY+ +L++H    +++   +++RY
Sbjct: 189 FAVGMSIVMTAFTFYHTSLLIHNLSTLESMSSSWSRY 225


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +3

Query: 207 NDPDVGTALITRTADDFICSLTTLTTSGGKDCPENSLAGIEHALRVS 347
           N+P+ G+ +            T+L  +  ++   N+L  ++H L++S
Sbjct: 369 NNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKIS 415


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 497 SGISGRHIAYTGQYYMDLTIFISAQIQN 414
           SGISGR +  T Q    LTI  S  IQ+
Sbjct: 92  SGISGRPVESTEQLNSSLTIERSQSIQS 119


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 32  FTSVYYHDSRNNVQKFYSCYRYNGIY 109
           + S  Y+  R +V +++  Y+Y GIY
Sbjct: 113 YDSYPYNIERADVVRYFILYKYGGIY 138


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 224 YRIDNKNCR*LHMFFDYINHERW*RLSR 307
           Y + +   R +H F  Y+  E W RL R
Sbjct: 840 YTVLDNALRLMHPFMPYVTEEMWQRLPR 867


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 369 VFTDAYPKNY-GNMPSVLDLCTNKYSQVHII 458
           VFT    K + GN P V  +CT  YS+ H +
Sbjct: 16  VFTILKQKAFKGNHPCVPSVCTITYSRFHCL 46


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +3

Query: 363 IYVFTDAYPKNYGNMPSVLDLCTNKYSQVHIILTGVCYMSARNSAGRL 506
           IY F    P+NY      +     +    HI L  V Y S  +   RL
Sbjct: 45  IYYFPKLNPRNYHKFVDTISRKPTRKLVHHISLNNVSYASKASITSRL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,419
Number of Sequences: 5004
Number of extensions: 48572
Number of successful extensions: 138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)