SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    91   6e-19
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    91   6e-19
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    91   6e-19
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    91   6e-19
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    91   6e-19
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    48   3e-06
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    33   0.094
Z48717-1|CAA88603.1|  520|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z48717-2|CAA88604.1|  520|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U14635-5|AAN63442.1|  464|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U14635-4|AAL02446.1|  459|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U14635-3|AAN63441.1|  491|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U14635-2|AAC46656.2|  522|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U64853-2|AAB04975.2|  529|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66521-1|CAA91393.2|  382|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopam...    28   4.7  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    28   4.7  
Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical p...    27   8.1  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    27   8.1  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    27   8.1  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        27   8.1  
AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    27   8.1  

>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
           protein F15G9.4b protein.
          Length = 5198

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 75  SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 248
           S   V D T SM D++  ++    ++ + +    +  +  YI+VPF+DP +G  + T  +
Sbjct: 36  SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95

Query: 249 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 428
             F+  L+ +   GG DCPE +L GI  AL++S P S IYVFTDA  K+Y     VL+  
Sbjct: 96  TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155

Query: 429 TNKYSQVHIILTGVC 473
             K S V  ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
           protein F15G9.4a protein.
          Length = 5175

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 75  SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 248
           S   V D T SM D++  ++    ++ + +    +  +  YI+VPF+DP +G  + T  +
Sbjct: 36  SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95

Query: 249 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 428
             F+  L+ +   GG DCPE +L GI  AL++S P S IYVFTDA  K+Y     VL+  
Sbjct: 96  TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155

Query: 429 TNKYSQVHIILTGVC 473
             K S V  ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
           protein F15G9.4b protein.
          Length = 5198

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 75  SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 248
           S   V D T SM D++  ++    ++ + +    +  +  YI+VPF+DP +G  + T  +
Sbjct: 36  SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95

Query: 249 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 428
             F+  L+ +   GG DCPE +L GI  AL++S P S IYVFTDA  K+Y     VL+  
Sbjct: 96  TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155

Query: 429 TNKYSQVHIILTGVC 473
             K S V  ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
           protein F15G9.4a protein.
          Length = 5175

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 75  SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 248
           S   V D T SM D++  ++    ++ + +    +  +  YI+VPF+DP +G  + T  +
Sbjct: 36  SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95

Query: 249 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 428
             F+  L+ +   GG DCPE +L GI  AL++S P S IYVFTDA  K+Y     VL+  
Sbjct: 96  TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155

Query: 429 TNKYSQVHIILTGVC 473
             K S V  ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
           precursor protein.
          Length = 5198

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 75  SFTVVIDTTESMDDEINIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTA 248
           S   V D T SM D++  ++    ++ + +    +  +  YI+VPF+DP +G  + T  +
Sbjct: 36  SLAFVFDITGSMFDDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDS 95

Query: 249 DDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLC 428
             F+  L+ +   GG DCPE +L GI  AL++S P S IYVFTDA  K+Y     VL+  
Sbjct: 96  TYFMRQLSKVYVHGGGDCPEKTLTGILKALQISLPSSFIYVFTDARSKDYHLEDEVLNTI 155

Query: 429 TNKYSQVHIILTGVC 473
             K S V  ++TG C
Sbjct: 156 QEKQSSVVFVMTGDC 170


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
 Frame = +3

Query: 72   KSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTV--SAYILVPFNDPDVGTALITRT 245
            KS  +V++TT    D +N + AN+  +V  + N   +  + + LV F+           T
Sbjct: 1547 KSLLMVVETTRQNSDTVNQLIANLKNIVSAVTNNMPLWFTNFGLVTFDTTGRTFEKFDYT 1606

Query: 246  A-DDFICSLTTLTTSGGKD--CPENSLAGIEHALRVSD----PESTIYVFTDAYPKNYGN 404
            + DD I  LTT + +   D  C    L  + H L   D    P S I++ T A P + GN
Sbjct: 1607 SIDDLITDLTTQSNAISTDGVCSMPYLGVLAHLLEHDDVIAMPNSEIFLVTPAGPSDLGN 1666

Query: 405  MPSVLDLCTNKYSQVHIILT 464
                +++  N  + +H +++
Sbjct: 1667 YVETMEVLFNTQAHLHYVVS 1686



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
 Frame = +3

Query: 75  SFTVVIDTTESMDDEINIIKANIGEVVRNLNNK-STVSAYILVPFNDPDVGTALITRTAD 251
           + T+VI +   +   I     ++  +V  L ++   +S +I+V F   D G  L+ R  D
Sbjct: 420 TLTLVIRSRSQLSAVIEQATESVQSIVDLLASEPGYLSKFIVVLF---DNGKLLVNRQYD 476

Query: 252 DFICSLTTLT-------TSGGKDCPENSLAGIEHALRVSDP-ESTIYVFTDAYPKNYGNM 407
            +  ++  LT       + GG  C +  ++ +  AL +    +S IYV TDA P +    
Sbjct: 477 SWDAAMVDLTKAIHSAPSEGG--CDDVVMSAVASALSLYPTNKSPIYVITDATPNDSAEK 534

Query: 408 PSVLDL 425
            +V  L
Sbjct: 535 ETVFHL 540


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
            F28B4.3 protein.
          Length = 2229

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
 Frame = +3

Query: 72   KSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKST--VSAYILVPFND-----PDVGTA 230
            K+   V++TT    D +N + AN+  +V +  N +    S + LV F+            
Sbjct: 1550 KTLLFVVETTRQNSDTVNQLIANLKNIVTSATNFAPFWFSYFGLVTFDTTGRTFEKYNYT 1609

Query: 231  LITRTADDFICSLTTLTTSGGKDCPENSLAG--IEHALRVSDPESTIYVFTDAYPKNYGN 404
             I     D     T ++T G    P   +    +EH   +S P S I++ T A P +   
Sbjct: 1610 TIDALITDLTAQSTAISTDGACSMPYLGVLAHLLEHDNVISIPNSEIFLVTAAGPSDLNK 1669

Query: 405  MPSVLDLCTNKYSQVHIILT 464
                ++   N  + +H I++
Sbjct: 1670 YGEAMNSLFNTEAHLHYIVS 1689


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
 Frame = +3

Query: 54  IAEITCKSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTV-SAYILVPFNDPD---- 218
           + + + +S  + I+T  SM  ++++I  NI  +V +  ++  + S++I+  +        
Sbjct: 203 VVDFSSQSLIIAINTRTSMAYDLSMIIENIPTLVTDYQSQGVILSSFIVTVYRYTKSVYF 262

Query: 219 VGTALITRTADDFICSLTTLTTSGGKDCPE--NSLAGIEHALRVSDPESTIYVFTDA 383
           + T+  T T+D  I  L ++T +   D     +++A  +       P+ST+YVF D+
Sbjct: 263 METSAFT-TSDAMIDYLHSVTIAPSSDDQPLLDAIANSQSTQPTMRPKSTVYVFADS 318


>Z48717-1|CAA88603.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.1 protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 321 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHIIL 461
           G+E  L VS+PE    VF   +   YG   + +    NK  + H++L
Sbjct: 73  GVEKTLVVSNPEFVHEVFVKQFDNFYGRKTNPIQGDPNKNKRAHLVL 119


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 382 ASVKTYI-VDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEHMKSSA 245
           A +K+YI V+   +  K C+I   EF  Q+L  L+V+ VK H   +A
Sbjct: 435 AQLKSYIKVEVDDVIFKKCNIGECEFLTQTLTQLIVHKVKTHDTKTA 481


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 382 ASVKTYI-VDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEHMKSSA 245
           A +K+YI V+   +  K C+I   EF  Q+L  L+V+ VK H   +A
Sbjct: 435 AQLKSYIKVEVDDVIFKKCNIGECEFLTQTLTQLIVHKVKTHDTKTA 481


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 99  TESMDDEINIIKANIGEVVRNLNNKSTVSAYILVPFNDPDVGTAL-ITRTADDFICSLTT 275
           TE  D+ +   +   G+ + ++ N  T S  I +PFN P++G  L   RT D  I     
Sbjct: 156 TEERDEALRKCQQTTGDAIVDIWN--THSVQINLPFNKPNLGIMLGGGRTDDGSIVHGPI 213

Query: 276 LTTSGGKDCP-ENSLAGIEHALRVSD 350
                    P +N L  ++H + V+D
Sbjct: 214 YVRQIAHGSPFDNVLKKLDHIMMVND 239


>Z48717-2|CAA88604.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.2 protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 321 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHII 458
           G+E  L VS+PE    VF   +   YG   + +    NK  + H++
Sbjct: 73  GVEKTLIVSNPEFVHEVFVKQFDNFYGRKTNPIQGDPNKNKRAHLV 118


>U14635-5|AAN63442.1|  464|Caenorhabditis elegans Hypothetical
           protein C27H5.2d protein.
          Length = 464

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 329 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 237
           LD    +LWT   TA   CS   Y  IG SC
Sbjct: 23  LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53


>U14635-4|AAL02446.1|  459|Caenorhabditis elegans Hypothetical
           protein C27H5.2b protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 329 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 237
           LD    +LWT   TA   CS   Y  IG SC
Sbjct: 23  LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53


>U14635-3|AAN63441.1|  491|Caenorhabditis elegans Hypothetical
           protein C27H5.2c protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 329 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 237
           LD    +LWT   TA   CS   Y  IG SC
Sbjct: 23  LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53


>U14635-2|AAC46656.2|  522|Caenorhabditis elegans Hypothetical
           protein C27H5.2a protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 329 LDSGQRVLWTVFTTARG*CSQRTYEVIGSSC 237
           LD    +LWT   TA   CS   Y  IG SC
Sbjct: 23  LDEDAGILWTSLQTAFPGCSGMYYREIGDSC 53


>U64853-2|AAB04975.2|  529|Caenorhabditis elegans Hypothetical
           protein K11G9.2 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 120 INIIKANIGEVVRNL--NNKSTVSAYILVPFNDPDVGTALITRTADDFICSLTTLTTSGG 293
           +N++ +  G V  NL  +    V  Y+ +P+  P +G     +     + + T   T  G
Sbjct: 14  LNVLNSTCGPVQGNLYRHGNEEVHGYLGIPYAQPPIGILRFKKPVSADVWTETRDCTKYG 73

Query: 294 KDCPENSL 317
             CP + +
Sbjct: 74  PRCPPSGM 81


>Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.2 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
 Frame = +3

Query: 9   TRRKYFN----ILLLFIIMIAEIT-CKSFTVVIDTTESMDDEI-NIIKANIGEVVRNLNN 170
           T+ +YF+    +L +  +MI  I  C +F  ++   +  D+ + NII+ N    +     
Sbjct: 120 TKIRYFDGSGKVLWISYLMIPAICYCVAFYQLLRPNDDSDEYLRNIIRENYDLEI----- 174

Query: 171 KSTVSAYILVPFND 212
            STV+ YIL+P++D
Sbjct: 175 -STVARYILIPYSD 187


>Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.10 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 321 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHII 458
           G+E  L +SDPE    VF   +   YG   + +    NK  +V ++
Sbjct: 73  GVEKTLVISDPEFVHEVFVKQFDNFYGRKLTAIQGDPNKNKRVPLV 118


>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 128 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 39
           N+N+I + F  +  NC TF+R   Y D+ Q
Sbjct: 423 NVNVITNDF--VSENCTTFSRRSSYADDSQ 450


>Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical
           protein K09G1.4a protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 128 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 39
           N+N+I + F  +  NC TF+R   Y D+ Q
Sbjct: 288 NVNVITNDF--VSENCTTFSRRSSYADDSQ 315


>Z66521-1|CAA91393.2|  382|Caenorhabditis elegans Hypothetical
           protein W02B12.1 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 284 ERW*RLSRELFGRNRACLTCERPRVNNIRLHG 379
           E W +L     G N  C+ CE P  N+  LHG
Sbjct: 161 EDW-KLVNIFIGANDICVYCEDPYFNSTALHG 191


>Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.5 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 321 GIEHALRVSDPESTIYVFTDAYPKNYGNMPSVLDLCTNKYSQVHII 458
           G+E  L VSDPE    VF   +   Y    + L    +K  ++H++
Sbjct: 73  GVEKTLVVSDPEFVHEVFVKQFDNFYARKQNPLQGDPDKDPRIHLV 118


>AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopamine
           receptor shortvariant protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 128 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 39
           N+N+I + F  +  NC TF+R   Y D+ Q
Sbjct: 288 NVNVITNDF--VSENCTTFSRRSSYADDSQ 315


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 128 NINLIVHRFRCIDNNCKTFARYFGYHDNKQ 39
           N+N+I + F  +  NC TF+R   Y D+ Q
Sbjct: 423 NVNVITNDF--VSENCTTFSRRSSYADDSQ 450


>Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 105 SMDDEINIIKANIGEVVRNLNNKSTVSAYILVPFN 209
           S DD + I+K + G ++ +L+NK     Y ++PF+
Sbjct: 125 SFDDTMGILKCDSGFILEDLDNKLAKLGY-MMPFD 158


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 436 LLVHKSKTDGIFP*FFGYASVKTYIVDSGSLTRKACSIPA 317
           L +H  K D  FP  FGY++   Y+   G   RK   +PA
Sbjct: 248 LTIH-DKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSRLPA 286


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 436 LLVHKSKTDGIFP*FFGYASVKTYIVDSGSLTRKACSIPA 317
           L +H  K D  FP  FGY++   Y+   G   RK   +PA
Sbjct: 518 LTIH-DKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSRLPA 556


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 436 LLVHKSKTDGIFP*FFGYASVKTYIVDSGSLTRKACSIPA 317
           L +H  K D  FP  FGY++   Y+   G   RK   +PA
Sbjct: 518 LTIH-DKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSRLPA 556


>AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 105 SMDDEINIIKANIGEVVRNLNNKSTVSAYILVPFN 209
           S DD + I+K + G ++ +L+NK     Y ++PF+
Sbjct: 125 SFDDTMGILKCDSGFILEDLDNKLAKLGY-MMPFD 158


>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +3

Query: 21  YFNILLLFIIMIA---EITCKSFTVVIDTTESMDDEINIIKANIGEVVRNLNNKSTVSAY 191
           +FNI+L+++I+     ++    + +V     SM    +I+   +G V+ +  +   +   
Sbjct: 20  FFNIILIYLILTKSPKKMGTYKYLLVYFCCFSM--LYSILDIIVGPVIHSHGSSFFMMMK 77

Query: 192 ILVPFNDPDVGTALITRTADDFICSLTTLT 281
           + +  N P+VG  L++     F  S+TT++
Sbjct: 78  LGILKNHPEVGFLLVSLLCGCFAVSITTIS 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,879
Number of Sequences: 27780
Number of extensions: 271934
Number of successful extensions: 750
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -