Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    29   2.3  
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    28   4.0  
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    28   4.0  
05_04_0046 - 17482792-17483124                                         27   6.9  
04_04_1479 - 33888521-33888853                                         27   6.9  

>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 506 THSPKPQCARRVFETMGQFCFHCRFCSANFTA*HFFSVFVYRKT*RVTSSMCWSR*VLKS 327
           TH+   +C RR F      C  C + +A     + +SV   R+    T  M + R V K 
Sbjct: 15  THTLCVRCGRRSFHLQKSTCSSCGYPAARIRK-YNWSVKAIRRKTTGTGRMRYLRHVPKR 73

Query: 326 YKNNY 312
           +K+N+
Sbjct: 74  FKSNF 78


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 506 THSPKPQCARRVFETMGQFCFHCRFCSANFTA*HFFSVFVYRKT*RVTSSMCWSR*VLKS 327
           TH+   +C RR F      C  C + +A     + +SV   R+    T  M + R V + 
Sbjct: 36  THTLCVRCGRRSFHLQKSTCSSCGYPAARIRK-YNWSVKAIRRKTTGTGRMRYMRHVPRR 94

Query: 326 YKNNY 312
           +K+N+
Sbjct: 95  FKSNF 99


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 506 THSPKPQCARRVFETMGQFCFHCRFCSANFTA*HFFSVFVYRKT*RVTSSMCWSR*VLKS 327
           TH+   +C RR F      C  C + +A     + +SV   R+    T  M + R V + 
Sbjct: 15  THTLCVRCGRRSFHLQKSTCSSCGYPAARIRK-YNWSVKAIRRKTTGTGRMRYMRHVPRR 73

Query: 326 YKNNY 312
           +K+N+
Sbjct: 74  FKSNF 78


>05_04_0046 - 17482792-17483124
          Length = 110

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 260 NYGSYKVRCAICRTIGKETSNAC 192
           NYGS++ RC IC  +G   +  C
Sbjct: 50  NYGSFQGRCVICGGVGISDAYYC 72


>04_04_1479 - 33888521-33888853
          Length = 110

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 260 NYGSYKVRCAICRTIGKETSNAC 192
           NYGS++ RC IC  +G   +  C
Sbjct: 50  NYGSFQGRCVICGGVGISDAYYC 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,961,737
Number of Sequences: 37544
Number of extensions: 206437
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)