Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17787| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_42596| Best HMM Match : Glyco_hydro_85 (HMM E-Value=0)              28   5.4  
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)                   28   5.4  
SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)                  28   5.4  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            27   7.1  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.4  
SB_35828| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_12642| Best HMM Match : Pkinase (HMM E-Value=5.3e-07)               27   9.4  

>SB_17787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 10  SLINNKYNVDCKQYYSTNKYLIFTKISSYNF*DISHLHIEKAVAGDICSLIIMLLRN 180
           S ++N  NVD  +   TN  +I TK ++ N    +H H +  +   I ++II+++ N
Sbjct: 6   SYVSNDDNVDEDRITQTNNIIIITKTTTANHHPRNHHHHQNIIIIIINNIIIIIINN 62


>SB_42596| Best HMM Match : Glyco_hydro_85 (HMM E-Value=0)
          Length = 753

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 329 SYKNNYYTIVYFYNIVLSRLTHVNYGSY 246
           SY N +Y +     I+LS +TH N  SY
Sbjct: 539 SYHNTFYNMGGKGGIILSEVTHTNCSSY 566


>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
          Length = 514

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 113 LIYTLKRQLLETFVVLLL--CSYETRVS-NTRLKSPFLSSCKLHIVLCNYRNSHA 268
           L+ T K   L+ F+  +L  C  E  V    R K P L  C L  +L N R + A
Sbjct: 426 LLLTYKNHALDEFLKAMLQFCEKENIVRIGGRCKEPQLEECNLQTILKNERYTQA 480


>SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)
          Length = 120

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 391 KTEKK-CYAVKLAEQKRQWKQN 453
           KT KK  Y V+L E++++WKQN
Sbjct: 14  KTAKKNAYLVELIERQKKWKQN 35


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 418 KLAEQKRQWKQNWPIVSNTRRAHCGLGE 501
           KLAE+KR+WK++    S++++A    GE
Sbjct: 45  KLAEEKRKWKEDID-TSDSKKARLATGE 71


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 391  KTEKK-CYAVKLAEQKRQWKQN 453
            KT KK  Y V+L E+ ++WKQN
Sbjct: 1063 KTAKKNAYLVELIERHKKWKQN 1084


>SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +2

Query: 116 IYTLKRQLLETFVVLLLCSYETRVSNTRLKSPFLSSCKLHIVLCNYRNSHASS 274
           IY L  Q    +  +  C+  TR     + +P       H+++C+    H++S
Sbjct: 197 IYALYHQSYVHYDAVATCTMSTRSEEVSIPAPESIKSTEHVLMCSCGRGHSTS 249


>SB_35828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 391 KTEKK-CYAVKLAEQKRQWKQN 453
           KT KK  Y V+L E+ ++WKQN
Sbjct: 14  KTAKKNAYLVELIERHKKWKQN 35


>SB_12642| Best HMM Match : Pkinase (HMM E-Value=5.3e-07)
          Length = 253

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 391 KTEKK-CYAVKLAEQKRQWKQN 453
           KT KK  Y V+L E+ ++WKQN
Sbjct: 129 KTAKKNAYLVELIERHKKWKQN 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,670
Number of Sequences: 59808
Number of extensions: 276380
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)