Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    29   2.5  
At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /...    28   3.3  
At3g51280.1 68416.m05613 male sterility MS5, putative similar to...    28   4.4  
At2g30000.1 68415.m03650 expressed protein contains Pfam domain ...    27   5.8  
At1g07170.1 68414.m00763 expressed protein contains Pfam domain ...    27   5.8  

>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 326 YKNNYYTIVYFYNIVLSRLTHVNYGSY 246
           Y NNYY+++Y  + V S L  VN  +Y
Sbjct: 182 YSNNYYSVLYPVSAVASSLDWVNLMAY 208


>At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Brassica napus]
           GI:1212786; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 290 NIVLSRLTHVNYGSYKVRCAICRT--IGKETSNAC 192
           N+++S LT +N  +Y +    CR   I + T+N C
Sbjct: 189 NVIVSNLTFLNAPAYTIHSVYCRNLYIHRVTANTC 223


>At3g51280.1 68416.m05613 male sterility MS5, putative similar to
           male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 430

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 375 GLPVNKDRKKMLCSKVSGTKTAMETKLAHSFKHATCTL 488
           GLP NKD +  + + V GT+T ++ K    F+  T  L
Sbjct: 389 GLPDNKDFEDAIMAAVLGTETKVDKKRLKVFQDITLCL 426


>At2g30000.1 68415.m03650 expressed protein contains Pfam domain
           PF03660: Uncharacterised protein family (UPF0123)
          Length = 110

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 260 NYGSYKVRCAICRTIGKETSNAC 192
           NYGS++ RC IC  +G   +  C
Sbjct: 50  NYGSFQGRCVICGGVGISDAYYC 72


>At1g07170.1 68414.m00763 expressed protein contains Pfam domain
           PF03660: Uncharacterised protein family (UPF0123)
          Length = 110

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 260 NYGSYKVRCAICRTIGKETSNAC 192
           NYGS++ RC IC  +G   +  C
Sbjct: 50  NYGSFQGRCVICGGVGISDAYYC 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,059,458
Number of Sequences: 28952
Number of extensions: 181377
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)