Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.2  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   2.2  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    26   3.9  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   5.2  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   6.8  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    25   9.0  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +2

Query: 155 STVSEDTPLVSGIDTIKDRNPSISRISLDVNLAEI*CLPAHGGVSLKLAVAKVPGATFSS 334
           STVS  TPL S   T    + S +  S   N + +  LP+    S  L+ A    AT +S
Sbjct: 247 STVSSSTPLTSSNSTTAATSASATSSSAQYNTSSL--LPSSTPSSTPLSSANSTTATSAS 304

Query: 335 NAILS 349
           +  L+
Sbjct: 305 STPLT 309


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 SELLIQTWTLNIKLAVLQRNRQGILHFDVNGKFLAGD 453
           SE ++Q WT  I       +  GI+H D   KF+AG+
Sbjct: 330 SEKIVQAWT--IADGSKAPDAAGIIHSDFKKKFVAGE 364


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 217 VNIPYFFGCELSRDLMSACPRRSKL 291
           VN+  FFGC LS  LM    +R+ +
Sbjct: 65  VNVGSFFGCFLSSPLMDRIGKRTSI 89


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 83 LFIYYFTFI*HVKLNYNLLF 24
          LFI YF ++ HV++N + LF
Sbjct: 40 LFIVYFFYLLHVRINTSPLF 59


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 260 RSRLSSHPKKYGILTDFYLLLCQCQKPTECL 168
           R+ LS H K   + T ++ L C C  P + L
Sbjct: 211 RTDLSYHKKLNTLFTAYWDLQCMCSNPPKLL 241


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 388 VLQRNRQGILHFDVNGKFLAGDRFAVN 468
           V + NR   +HF    KFLA  R AV+
Sbjct: 245 VKEGNRPASIHFHTRRKFLAQKRAAVS 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,939
Number of Sequences: 5004
Number of extensions: 43116
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)