Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498     29   3.0  
11_01_0652 - 5278178-5278388,5279118-5279197,5279198-5279271,527...    28   4.0  
12_01_0610 + 5030130-5030247,5030957-5033193                           27   6.9  
01_05_0785 - 25189595-25189768,25189867-25189938                       27   9.1  

>01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498
          Length = 401

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 244 ELSRDLMSACPRRSKLEVSS-RKGTRCHVLV*CNSELLIQTWTLNI 378
           +L+  +++  P R +   SS R GT C V+  C  EL  Q W L +
Sbjct: 346 KLNFTVLAPTPMRLQQAYSSVRYGTSCMVMTGCRKELGSQGWLLEV 391


>11_01_0652 -
           5278178-5278388,5279118-5279197,5279198-5279271,
           5279721-5279787,5279972-5280034,5280288-5281442
          Length = 549

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 219 DGFLSFIVSMPETNGVSSETVETRQI*FISFKHLLSK*IVLIMITALYLL 70
           +G +  + ++P  N  S   V+     F S  HL    I +IMI  +  L
Sbjct: 432 NGTVHHLANVPRCNSFSGSVVQVSLYPFCSISHLFQDHITMIMIVLMIFL 481


>12_01_0610 + 5030130-5030247,5030957-5033193
          Length = 784

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 369 GPGLDEQLRIALDENVAPGTFATANFKLTPPWAGRHQISAKFTSKEIRDIDGFLSFI-VS 193
           GP LD  LRI L      G  AT N     P    + ++    ++ IR IDG +  I V+
Sbjct: 153 GPDLDLPLRILLLGKTGVGKSATINSIFDEPKVATNALAP--ATERIRRIDGTIKGIRVT 210

Query: 192 MPETNGV 172
           + +T G+
Sbjct: 211 VIDTPGL 217


>01_05_0785 - 25189595-25189768,25189867-25189938
          Length = 81

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 411 PLPIPLKNGKFYIQGPGLDEQLRIALDEN 325
           P+P+P+ +G  + + P +  + R AL EN
Sbjct: 10  PMPVPMPDGHGHARRPFIGRKFRSALPEN 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,139
Number of Sequences: 37544
Number of extensions: 263995
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)