Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr...    28   4.4  
At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ...    27   5.8  
At1g10370.1 68414.m01168 glutathione S-transferase, putative (ER...    27   7.7  

>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
           protein
          Length = 511

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 179 LVSGIDTIKDRNPSISRISLDVNLAEI*CLPAHGGVSLKLA 301
           LV+G D I       ++   DV L  I C+P+H GV L+LA
Sbjct: 167 LVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGV-LELA 206


>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
           ankyrin repeat family protein similar to patsas protein
           [Drosophila melanogaster] GI:6002770; contains Pfam
           profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
           finger domain
          Length = 592

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 HSVGFWH*HNKR*KSVNIPYFFGCELSRD 258
           HS    H HN + KS N+P   G  LSR+
Sbjct: 556 HSANCSHSHNSKSKSDNVPLGLGLGLSRN 584


>At1g10370.1 68414.m01168 glutathione S-transferase, putative (ERD9)
           similar to glutathione S-transferase TSI-1 [Aegilops
           tauschii] gi:2190992 gb:AAD10129; similar to ESTs
           gb|R29860, emb|Z29757, and emb|Z29758; identical to cDNA
           ERD9 mRNA for glutathione S-transferase,  GI:15375407,
           glutathione S-transferase [Arabidopsis thaliana]
           GI:15375408
          Length = 170

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 266 LPAHGGVSLKLAVAKVP-GATFSSNAILSCSSKPGP*I*NLPFFNGIGKGFSTLM 427
           L A G    K  +A++  G  F   A + CS          PFFNG   G+STL+
Sbjct: 116 LKAGGEEEKKAVIAQLEEGNAFLEKAFIDCSK-------GKPFFNGDNIGYSTLL 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,425
Number of Sequences: 28952
Number of extensions: 221573
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)