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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    28   0.97 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   3.0  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   6.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.8  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   6.8  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.0  

>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 468 EGLSRSDLKPXELLFYQLQESCAKLWYTFISSIHIQPHY-ILQNPXSSCVTQSNRQ 304
           E LS S+    +LL  + QES AK   +F S+I  QP+  +L+     C  +S  Q
Sbjct: 344 ESLSDSEAARLQLLGIKKQESVAKKKSSFPSTIKDQPNLTLLEYLIRLCALESTTQ 399


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 305 NISTSFNSTTVFHKGYLRKPNTAQQTANDYQYSLTETWT 189
           +I TS NS+++    +LR+P      A+ + YSL    T
Sbjct: 365 SILTSLNSSSLKENYFLREPKANALDASAFHYSLYRAMT 403


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 311 IVNISTSFNSTTVFHKGYLRKPNTAQQTANDYQ 213
           I +++T  ++T     GY RK + A+ T ND++
Sbjct: 381 ISSLTTGLSTTEGHETGYSRKLHEARDTLNDFK 413


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 386 RSFPAFTYSXITYFRILDLAVLPKAIVNISTSFNS 282
           RSFP  T+  I  F   ++  LP+ +  +   F+S
Sbjct: 39  RSFPGSTWKTIVTFATQEVFYLPEGLEPLKRDFSS 73


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 332 LAVLPKAIVNISTSFNSTTVFHKGYLRKPNTAQQT 228
           LAVLP+ I + ST  ++T+ +H      P T   T
Sbjct: 163 LAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITST 197


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 329 AVLPKAIVNISTSFNSTTVFHKGYLRKPNTAQQTANDYQYSLTE 198
           AVL   I + S      TVFH+G+ + P+    T   ++ ++ E
Sbjct: 57  AVLEFNIPSESYHIMKITVFHEGFRKHPHLIGDTVLSFEKAMKE 100


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 449 SERXSPSGXPIXGTKHDM 502
           SER S SG P  G +HD+
Sbjct: 190 SERLSKSGSPSVGAQHDL 207


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -3

Query: 357 HYILQNPXSSCVTQSNRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFINRDVDV 187
           +Y+     S+C      +  +F QF   + QR+F   Q+     + LS F  R + +
Sbjct: 501 NYVSVTDISNCYGDLCMKVAHFPQFRSCVFQRLFTNLQHWDVKVQQLSAFSLRQLSI 557


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 389 YHSFAQLSCNW*NNNSKGFKS 451
           +HS  QLS ++ N+  K FKS
Sbjct: 60  FHSHCQLSSSYTNSGQKSFKS 80


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 70  LLHYPVDLLMTD*DNVNVCDINKRT 144
           LLH  +D +++D   VNVC IN  T
Sbjct: 208 LLHNVLDHVVSDYPKVNVCYINCMT 232


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 245 NTAQQTANDYQYSLTETWTS*SHFTVQHR*VLLSVLLFMSHTFTLSQS 102
           N     A +Y Y +  +++    +T++   +LLSV LF   +  LSQ+
Sbjct: 268 NYPYHEAYEYYYYIRSSFSWEDSYTIEVVQILLSVALFALFSSRLSQA 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,773
Number of Sequences: 5004
Number of extensions: 37816
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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