Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312C12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 28 0.97
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 2.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 3.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 6.8
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 6.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 6.8
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 6.8
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 6.8
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 9.0
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 0.97
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 468 EGLSRSDLKPXELLFYQLQESCAKLWYTFISSIHIQPHY-ILQNPXSSCVTQSNRQ 304
E LS S+ +LL + QES AK +F S+I QP+ +L+ C +S Q
Sbjct: 344 ESLSDSEAARLQLLGIKKQESVAKKKSSFPSTIKDQPNLTLLEYLIRLCALESTTQ 399
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 305 NISTSFNSTTVFHKGYLRKPNTAQQTANDYQYSLTETWT 189
+I TS NS+++ +LR+P A+ + YSL T
Sbjct: 365 SILTSLNSSSLKENYFLREPKANALDASAFHYSLYRAMT 403
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 311 IVNISTSFNSTTVFHKGYLRKPNTAQQTANDYQ 213
I +++T ++T GY RK + A+ T ND++
Sbjct: 381 ISSLTTGLSTTEGHETGYSRKLHEARDTLNDFK 413
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 386 RSFPAFTYSXITYFRILDLAVLPKAIVNISTSFNS 282
RSFP T+ I F ++ LP+ + + F+S
Sbjct: 39 RSFPGSTWKTIVTFATQEVFYLPEGLEPLKRDFSS 73
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 332 LAVLPKAIVNISTSFNSTTVFHKGYLRKPNTAQQT 228
LAVLP+ I + ST ++T+ +H P T T
Sbjct: 163 LAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITST 197
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 329 AVLPKAIVNISTSFNSTTVFHKGYLRKPNTAQQTANDYQYSLTE 198
AVL I + S TVFH+G+ + P+ T ++ ++ E
Sbjct: 57 AVLEFNIPSESYHIMKITVFHEGFRKHPHLIGDTVLSFEKAMKE 100
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 449 SERXSPSGXPIXGTKHDM 502
SER S SG P G +HD+
Sbjct: 190 SERLSKSGSPSVGAQHDL 207
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -3
Query: 357 HYILQNPXSSCVTQSNRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFINRDVDV 187
+Y+ S+C + +F QF + QR+F Q+ + LS F R + +
Sbjct: 501 NYVSVTDISNCYGDLCMKVAHFPQFRSCVFQRLFTNLQHWDVKVQQLSAFSLRQLSI 557
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 389 YHSFAQLSCNW*NNNSKGFKS 451
+HS QLS ++ N+ K FKS
Sbjct: 60 FHSHCQLSSSYTNSGQKSFKS 80
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 70 LLHYPVDLLMTD*DNVNVCDINKRT 144
LLH +D +++D VNVC IN T
Sbjct: 208 LLHNVLDHVVSDYPKVNVCYINCMT 232
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 245 NTAQQTANDYQYSLTETWTS*SHFTVQHR*VLLSVLLFMSHTFTLSQS 102
N A +Y Y + +++ +T++ +LLSV LF + LSQ+
Sbjct: 268 NYPYHEAYEYYYYIRSSFSWEDSYTIEVVQILLSVALFALFSSRLSQA 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,773
Number of Sequences: 5004
Number of extensions: 37816
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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