BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312C12f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 28 0.97 SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 2.2 SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 3.0 SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8 SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 6.8 SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 6.8 SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 6.8 SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 6.8 SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 6.8 SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 9.0 SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 9.0 >SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 551 Score = 27.9 bits (59), Expect = 0.97 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -3 Query: 468 EGLSRSDLKPXELLFYQLQESCAKLWYTFISSIHIQPHY-ILQNPXSSCVTQSNRQ 304 E LS S+ +LL + QES AK +F S+I QP+ +L+ C +S Q Sbjct: 344 ESLSDSEAARLQLLGIKKQESVAKKKSSFPSTIKDQPNLTLLEYLIRLCALESTTQ 399 >SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosaccharomyces pombe|chr 2|||Manual Length = 2358 Score = 26.6 bits (56), Expect = 2.2 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -1 Query: 305 NISTSFNSTTVFHKGYLRKPNTAQQTANDYQYSLTETWT 189 +I TS NS+++ +LR+P A+ + YSL T Sbjct: 365 SILTSLNSSSLKENYFLREPKANALDASAFHYSLYRAMT 403 >SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosaccharomyces pombe|chr 2|||Manual Length = 1172 Score = 26.2 bits (55), Expect = 3.0 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -1 Query: 311 IVNISTSFNSTTVFHKGYLRKPNTAQQTANDYQ 213 I +++T ++T GY RK + A+ T ND++ Sbjct: 381 ISSLTTGLSTTEGHETGYSRKLHEARDTLNDFK 413 >SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 751 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -1 Query: 386 RSFPAFTYSXITYFRILDLAVLPKAIVNISTSFNS 282 RSFP T+ I F ++ LP+ + + F+S Sbjct: 39 RSFPGSTWKTIVTFATQEVFYLPEGLEPLKRDFSS 73 >SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 463 Score = 25.0 bits (52), Expect = 6.8 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 332 LAVLPKAIVNISTSFNSTTVFHKGYLRKPNTAQQT 228 LAVLP+ I + ST ++T+ +H P T T Sbjct: 163 LAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITST 197 >SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 272 Score = 25.0 bits (52), Expect = 6.8 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -1 Query: 329 AVLPKAIVNISTSFNSTTVFHKGYLRKPNTAQQTANDYQYSLTE 198 AVL I + S TVFH+G+ + P+ T ++ ++ E Sbjct: 57 AVLEFNIPSESYHIMKITVFHEGFRKHPHLIGDTVLSFEKAMKE 100 >SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 967 Score = 25.0 bits (52), Expect = 6.8 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 449 SERXSPSGXPIXGTKHDM 502 SER S SG P G +HD+ Sbjct: 190 SERLSKSGSPSVGAQHDL 207 >SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schizosaccharomyces pombe|chr 2|||Manual Length = 1107 Score = 25.0 bits (52), Expect = 6.8 Identities = 14/57 (24%), Positives = 25/57 (43%) Frame = -3 Query: 357 HYILQNPXSSCVTQSNRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFINRDVDV 187 +Y+ S+C + +F QF + QR+F Q+ + LS F R + + Sbjct: 501 NYVSVTDISNCYGDLCMKVAHFPQFRSCVFQRLFTNLQHWDVKVQQLSAFSLRQLSI 557 >SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosaccharomyces pombe|chr 2|||Manual Length = 346 Score = 25.0 bits (52), Expect = 6.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 389 YHSFAQLSCNW*NNNSKGFKS 451 +HS QLS ++ N+ K FKS Sbjct: 60 FHSHCQLSSSYTNSGQKSFKS 80 >SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 24.6 bits (51), Expect = 9.0 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 70 LLHYPVDLLMTD*DNVNVCDINKRT 144 LLH +D +++D VNVC IN T Sbjct: 208 LLHNVLDHVVSDYPKVNVCYINCMT 232 >SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 24.6 bits (51), Expect = 9.0 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = -1 Query: 245 NTAQQTANDYQYSLTETWTS*SHFTVQHR*VLLSVLLFMSHTFTLSQS 102 N A +Y Y + +++ +T++ +LLSV LF + LSQ+ Sbjct: 268 NYPYHEAYEYYYYIRSSFSWEDSYTIEVVQILLSVALFALFSSRLSQA 315 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,976,773 Number of Sequences: 5004 Number of extensions: 37816 Number of successful extensions: 111 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 111 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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