Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0554 - 3945185-3945665,3946122-3947011,3947635-3947967           29   2.3  
04_03_0610 - 17972032-17972835                                         29   3.0  
03_01_0266 - 2057354-2057638,2057762-2058022,2058342-2058778,205...    28   4.0  
12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639...    28   5.2  
03_02_0087 + 5553730-5553842,5555221-5555353,5555887-5556023,555...    27   9.1  

>06_01_0554 - 3945185-3945665,3946122-3947011,3947635-3947967
          Length = 567

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 454 LRLKALXIVILPVTRKLRKTMVYVHFQHSHTAXLHTSESXI*LCYPKQSSIFLLPS 287
           +R + L    L    ++   ++Y+ F   H A LH S + + +CY  Q S+ +  S
Sbjct: 407 VRSRTLPRTTLITCTQVMMIIIYLLFALGHHATLHVSVALLGICYGAQFSVMVSTS 462


>04_03_0610 - 17972032-17972835
          Length = 267

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = -1

Query: 500 CHASCXEWXDPRDXLAQT*SPXNCYFTSYKKVAQNYGIRSFPAFTYSXITYFRILDLAVL 321
           C A+C    D       T S   C  T+  K  QNYGI     F  + I        A L
Sbjct: 113 CVATCNSQGDLASLSDGTCSGIGCCQTTIPKGLQNYGIWFDDRFNTAKIYNMSRCSYAAL 172

Query: 320 PKAI-VNISTSFNSTTVFHKGY 258
            +A     STS+  ++ F+  Y
Sbjct: 173 VEASNFTFSTSYAMSSAFNDTY 194


>03_01_0266 -
           2057354-2057638,2057762-2058022,2058342-2058778,
           2058889-2059213
          Length = 435

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 297 YFLQFYDGISQRIFAQTQYCATNGK*LSVFINRDVDVLIALHCATQVSTF-ICSFIYVTH 121
           YF Q  DGI  RIF   QY       +S+ ++   + L+ L     +++F I    ++  
Sbjct: 328 YFKQL-DGIRNRIFLVRQYIVDTEDYISIQLDNKRNELLGLQLTLIIASFGIAINTFIAA 386

Query: 120 VYVISIGH 97
            + ++I H
Sbjct: 387 AFAMNIPH 394


>12_02_0737 +
           22662657-22662733,22662843-22662930,22663873-22663925,
           22664067-22664542,22664645-22664805,22664889-22665086,
           22665324-22665531,22665632-22665756,22665897-22666080,
           22666184-22666344
          Length = 576

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 324 VTQSNRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFIN 202
           ++  N+   Y L+F +G+S  +F +   C  NG+ L + ++
Sbjct: 75  LSDQNQPPRYKLRFSNGLSNEVFTKKGICDVNGESLKISVH 115


>03_02_0087 +
           5553730-5553842,5555221-5555353,5555887-5556023,
           5556254-5556311,5556403-5556642
          Length = 226

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 312 NRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFINRDVDVLIALHCATQVSTFICSFI 133
           NR+        DGI+  +      CA++G  ++V I+ D+D+    HCA+  S    +F+
Sbjct: 70  NRRAVCLFAIGDGITAALTFSAA-CASSG--ITVLIDNDLDLCSENHCASFESATAMAFL 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,486,422
Number of Sequences: 37544
Number of extensions: 199072
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)