Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                     29   3.1  
SB_7748| Best HMM Match : DUF229 (HMM E-Value=4.5e-10)                 28   5.4  
SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 289 KEVEILTIALGNTARSRILKYVMXLYVNAGNER 387
           +E+++LT+  GN+ +S  +K +  +Y +  NE+
Sbjct: 39  QEIQLLTLVSGNSGKSTFIKQLKIVYDDGFNEK 71


>SB_7748| Best HMM Match : DUF229 (HMM E-Value=4.5e-10)
          Length = 784

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 130 CHTRLRYLNRSLVSLQDNVKGR---FVSKLFYNTVSFPFTIL 14
           CH R   ++ S  SL D +  R   FVS + Y TVSF F+++
Sbjct: 725 CHGRSFMVDVSGSSLDDVIVSRGLPFVSTVQYRTVSFLFSVI 766


>SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 226 AVCCAVLGLRKYPL*NTVVELKEVEILTIALGNTARSRILKYVM 357
           AV C +LG  +  L N      ++ IL I   +TA+S++L+YV+
Sbjct: 105 AVLCLLLGGTEKVLENGTRLRGDINILLIGDPSTAKSQMLRYVL 148


>SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 286 ILRRYFTKDICANPILRNKRQMIISIH*QRRG---RPNRTSLCNTGKYF 149
           +LR  FTKD+ AN +   K    ++   ++RG   +PN T   N  K +
Sbjct: 808 VLREDFTKDLSANAMNYAKMTAAVAAQSRKRGALAKPNFTDTYNALKLY 856


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,438
Number of Sequences: 59808
Number of extensions: 274854
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)