Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical ...    28   4.7  

>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 207 INRDVDVLIALHCATQVSTFICSFIYVTHVYVISIGH**VYRIM*KVDLLVNYFTIPFHF 28
           +N   D++   +    +S FI S IY+  ++++   +  VYR   K D +  +  I  HF
Sbjct: 1   MNETTDIITIPNTVAGISLFIFSAIYLFSLFIMFPIYVYVYRYNDKNDKMALFHPITSHF 60

Query: 27  H 25
           +
Sbjct: 61  Y 61


>U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical
           protein C41G11.4c protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 431 CYFTSYKKVAQNYGIRSFPAFTYSXITYFRILDLAVLPKA 312
           C F  Y  +  NY   SF  F+Y  + +   LDL+V+P+A
Sbjct: 521 CSF-KYYFITNNYS--SFSIFSYYIVQFLPTLDLSVVPQA 557


>U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical
           protein C25B8.4b protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 383 SFPAFTYSXITYFRILDLAVLPKAIVNISTSFNSTTVFHKGY 258
           SF  F Y   +YFRI  L +L  A+  +ST F    +F+  Y
Sbjct: 27  SFEKF-YVTKSYFRIFKLVLLVAAVGFVSTRFAQVKLFNWSY 67


>AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical
           protein R13D11.4 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 139 FYLCHTRLRY-LNRSLVSLQDNVKGRFVSKLFYNTVSFPFTILLIQ 5
           F + H  L   +NR++   ++N +  FV KLF  T++ PF+  L++
Sbjct: 272 FLMSHFLLEEPMNRAIGMSRENFQP-FVDKLFERTLNIPFSFALVE 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,801,517
Number of Sequences: 27780
Number of extensions: 208589
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)