Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = -2

Query: 394 MVYVHFQHSHTAXLHTSESXI 332
           ++++H+QH H   + T +  +
Sbjct: 3   VLHIHYQHYHITPVFTKQKKV 23


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 382 HFQHSHTAXLHTSES 338
           H+ H+H    H+S+S
Sbjct: 424 HYNHNHNQARHSSKS 438


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/48 (20%), Positives = 20/48 (41%)
 Frame = -3

Query: 342 NPXSSCVTQSNRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFINR 199
           NP    ++Q+N  +   +  +DG+   ++     C   G     +I R
Sbjct: 151 NPLDDSISQANEGFCAVISMHDGLV--LYTTPSICTALGYLKDAWIGR 196


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/48 (20%), Positives = 20/48 (41%)
 Frame = -3

Query: 342 NPXSSCVTQSNRQYFYFLQFYDGISQRIFAQTQYCATNGK*LSVFINR 199
           NP    ++Q+N  +   +  +DG+   ++     C   G     +I R
Sbjct: 146 NPLDDSISQANEGFCAVISMHDGLV--LYTTPSICTALGYLKDAWIGR 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,440
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)