Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni...    27   5.8  
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    27   7.7  

>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
           (CSN6B) identical to COP9 signalosome subunit 6
           [Arabidopsis thaliana] GI:17940314, CSN complex subunit
           6B [Arabidopsis thaliana] GI:18056667; contains Pfam
           profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
           gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
           CSN complex subunit 6B (CSN6B) GI:18056666
          Length = 317

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 381 ISSIHIQPHYILQNPXSSCVTQSNRQYFYFLQFY--DGISQRIFAQTQY 241
           +  I+  P Y+L NP  +   +      Y  +F+  DGI Q IF  T Y
Sbjct: 130 LMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSY 178


>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 121 RLRYLNRSLVSLQDNVKGRFVSKLFYNTVS 32
           +L+YLN   +S    +KGRF+ K ++N+V+
Sbjct: 275 KLKYLN---LSRSPTIKGRFLRKKYWNSVT 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,812,544
Number of Sequences: 28952
Number of extensions: 176979
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)