Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   5.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   9.0  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   9.0  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 209 IFLFLFYLINIVFFFFRYNNINSKC 135
           IFLFL Y+++IV +   YN  +  C
Sbjct: 39  IFLFLNYVVDIVCYVKNYNGFSFFC 63


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 209 IFLFLFYLINIVFFF 165
           +F++ FY++ I+FFF
Sbjct: 267 LFMWFFYMLTIIFFF 281


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 260 VMSILTMSINVYLSTYPIFLFLFYLINIVF 171
           V+    +S    L+ YP+FLF F L  I+F
Sbjct: 195 VLQNSNLSNKKLLAVYPLFLFYFSLAWIIF 224


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 230 VYLSTYPIFLFLFYLINIVFFFFRY 156
           VY S++PI  FLF+    V  F  +
Sbjct: 145 VYFSSFPILHFLFFFFLCVCVFLSF 169


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 210 NFFIFILFNKYSFFLFPI 157
           N F FILF  + F LFPI
Sbjct: 226 NVFFFILFAVHWFALFPI 243


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 206 FLFLFYLINIVFFF 165
           F FLF+L+N + FF
Sbjct: 77  FFFLFWLLNFILFF 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,734
Number of Sequences: 5004
Number of extensions: 32648
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)