Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    28   3.5  
Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 251 ILTMSINVYLSTYPIFLFLFYLINIVFFFFRYNNINSKC 135
           +  ++ ++  S   +FL + ++I+ + FF  Y  I  KC
Sbjct: 180 VFVLATDITYSLLSVFLVVIFIISEILFFIFYVKIQMKC 218


>Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical
           protein T03E6.2 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 269 CNFVMSILTMSINVYLSTYPIFLFLFYLINIVFFFFRYNNINSKC 135
           C  +M +   +I++YL+       LF  +++  FFF +N  N KC
Sbjct: 89  CCIIMGLCFSTISLYLNRQ-----LFLTLSLQVFFFFFNFSNRKC 128


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
            E03G2.2 protein.
          Length = 1503

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 260  VMSILTMSINVYLSTYPIFLFLFYLINIVFFFFRYNNINS 141
            VM+++ M++ +   T P+F+ +   + I++FF    +I S
Sbjct: 1066 VMALINMTVLIVSYTTPLFIAIIIPVFIIYFFVLKYSIKS 1105


>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 266 NFVMSILTMSINVYLSTYPIFLFLFYLINIVFFFF 162
           +FVM IL+ +I  +  ++ IFL+    + I FFF+
Sbjct: 109 SFVMPILSFTIPNFSISFSIFLWAKLQVLIYFFFY 143


>AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical
           protein Y46G5A.8 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 263 FVMSILTMSINVYLS-TYPIFLFLFYLINIVFFFFRY 156
           ++ S L +SI V  S  YPIFL L  +I  + + ++Y
Sbjct: 157 YIFSSLFLSIFVRFSFLYPIFLILLIVIFSIVYLWKY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,075
Number of Sequences: 27780
Number of extensions: 179652
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)