Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)             34   0.082
SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.25 
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    29   3.1  
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_52751| Best HMM Match : CD225 (HMM E-Value=1.1)                     28   5.4  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     27   9.4  

>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
          Length = 333

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +1

Query: 157 DEKKGENEHINLKVLGQDNAIVQFKIKKHT--PLRKLMNAYCDRAGLSMQVVRFRFDGQP 330
           D++   N HI +  L  +  ++ FK  KHT   ++ L+ A   + G      R  F+GQ 
Sbjct: 64  DDQIVSNPHIAVLTLTGERILIPFKSPKHTIIEVKYLIEA---KGGYPKDQQRLVFNGQV 120

Query: 331 INENDTPTSLEMEEGDTIEVYQQQTGG 411
           +++ DT   + +  G T+ +  +  GG
Sbjct: 121 LSDEDTFEKVGIFAGATLHLIVRLLGG 147


>SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 9   SAKLRPDAITTPSHKLSFTRSFVKTDTKSVCQFTV 113
           S+  +P   +TP  K +FTR FV+++ ++ C++ +
Sbjct: 69  SSPKKPTPPSTPKGKTNFTRKFVRSEEQTTCEYRI 103


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  KQIPNQFVNSQFCINS-F*NHINLKMADEKKGENEHINLKVLGQDNAIVQFKIKKH 243
           K   NQ  + Q CI   F    NLK+AD+  G +  +  KV     A VQ  +K++
Sbjct: 201 KYYENQISSDQTCIKEWFETEENLKIADDSVGISFQLFFKVRELVEAEVQMDLKQY 256


>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 142 NLKMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 282
           ++K +DE+ GE E +  K  G+D A     +K+  P + L +   DR
Sbjct: 33  DVKASDEEAGEEEDVEAKDNGEDGASDTI-VKEKKPCKSLSDLQDDR 78


>SB_52751| Best HMM Match : CD225 (HMM E-Value=1.1)
          Length = 238

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 208 DNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEM 366
           D   + F I +    + + +AY  +A +SMQ VR +  G P+  +   TSL M
Sbjct: 2   DLVTLNFHIARER-FQDVQSAYIAKANVSMQRVRTQIHGHPVLSSLLGTSLVM 53


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +1

Query: 7   FPPSYDRTPLPRHRTSCHLRVRL*KQIPNQFVNSQFCINSF*NHINLKMAD-EKKGENEH 183
           F   Y+R P+P H T+ H    +  Q  N+++N    I ++ +H  +K+ D E +  +++
Sbjct: 345 FTTEYERIPVPEHVTATHSLDPV-NQHKNRYIN----IVAY-DHSRVKLQDFEDEPGSDY 398

Query: 184 INLKVL---GQDNAIV 222
           IN   L    +DNA +
Sbjct: 399 INANFLPGYRRDNAYI 414


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 13   PSYDRTPLPRHRTSCHLR 66
            P Y+R  LPR RTS H R
Sbjct: 1398 PQYERRTLPRRRTSHHQR 1415


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 366  GRGRHNRGLPTADRRSVPSVNLIILRIDHLXWVKINEVYPSQALTLS 506
            G G+ + GL TA   ++PSV L    +DHL  V + E   +  L ++
Sbjct: 977  GDGKEHFGLKTALHANMPSVWLPYTTLDHLL-VALGEASENSTLAIA 1022


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,816
Number of Sequences: 59808
Number of extensions: 284306
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)